Gene omics information

Query gene ID	Contig5609_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig5609_at	Contig5609	-	-	5e+0	At2g01905	CYCJ18 (CYCLIN J18)	S.X.	H.G.	Please select
0.71	87.1	Contig5607_s_at	Contig5607	-	-	4e-1	At3g17160	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig2163_at	Contig2163	-	-	3e-1	At2g04046	-	S.X.	H.G.	Please select
0.48	63.2	Contig17124_at	Contig17124	-	-	6e-1	At3g20180	metal ion binding	S.X.	H.G.	Please select
0.32	40.3	HVSMEc0009P17f_s_at	HVSMEc0009P17f	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	S.X.	H.G.	Please select
0.30	37.0	Contig14575_at	Contig14575	-	-	7e-26	At4g38040	exostosin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.8	99.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.7	99.0	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.6	98.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0	97.9	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-11	67	Contig765_x_at	Contig765	-	-	2e+0	At1g79510	unknown protein	C.G.	S.X.	Please select
0.06	7e-10	63	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	C.G.	S.X.	Please select
0.05	7e-10	63	Contig24415_at	Contig24415	-	-	4e+0	At4g14819	unknown protein	C.G.	S.X.	Please select
0.05	7e-10	63	Contig8283_at	Contig8283	-	-	3e-1	At2g28105	-	C.G.	S.X.	Please select
0.07	7e-10	63	rbaal20n01_s_at	rbaal20n01	-	-	4e-1	At3g46160	protein kinase-related	C.G.	S.X.	Please select
0.04	7e-10	63	Contig4860_at	Contig4860	-	-	1e-25	At5g54855	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.08	7e-10	63	Contig2082_x_at	Contig2082	-	-	9e-1	At1g72416	heat shock protein binding	C.G.	S.X.	Please select
0.08	7e-10	63	rbaal12h01_at	rbaal12h01	-	-	4e+0	At3g58290	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.04	7e-10	63	Contig19752_at	Contig19752	-	-	1e+0	At2g01340	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At2g01905	3768365	CYCJ18 (CYCLIN J18)	cyclin J18 (cycJ18)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-10	65	Glycine max	GmaAffx.6538.1.A1_at	CD397170	-	-	7e+0	At5g26040	HDA2	C.G.	S.X.	Please select
0.15	1e-26	121	Oryza sativa	Os04g0480900	AK109889.1	-	Glycoside hydrolase, family 5 protein	1e+0	At1g19120	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-9	63	Populus trichocarpa	Ptp.7924.1.S1_at	DN502515	-	-	1e+0	At1g32520	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	8e-107	387	Triticum aestivum	Ta.12303.1.S1_at	BQ172048	-	-	2e+1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	C.G.	S.X.	Please select
0.04	7e-6	50	Vitis vinifera	1617182_at	CB921793	-	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.05	6e-7	54	Zea mays	Zm.14917.1.A1_at	BM378490	-	-	9e-1	At1g04330	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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