Gene omics information

Query gene ID	Contig5607_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5607_s_at	Contig5607	-	-	4e-1	At3g17160	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig17124_at	Contig17124	-	-	6e-1	At3g20180	metal ion binding	S.X.	H.G.	Please select
0.61	78.7	Contig16368_at	Contig16368	-	-	1e-40	At3g29320	glucan phosphorylase, putative	S.X.	H.G.	Please select
0.43	56.4	Contig5609_at	Contig5609	-	-	5e+0	At2g01905	CYCJ18 (CYCLIN J18)	S.X.	H.G.	Please select
0.33	42.6	Contig12756_at	Contig12756	-	-	1e-21	At2g34090	MEE18 (maternal effect embryo arrest 18)	S.X.	H.G.	Please select
0.22	24.2	HVSMEc0009P17f_s_at	HVSMEc0009P17f	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.7	99.7	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
19.6	99.7	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.1	99.6	GSM372952	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.0	99.6	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.8	99.6	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.3	99.6	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.3	99.6	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.2	99.5	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.7	99.5	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.0	99.4	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	1197	Contig5605_at	Contig5605	-	-	2e+0	At1g08810	MYB60 (myb domain protein 60)	C.G.	S.X.	Please select
0.12	2e-29	129	Contig15224_at	Contig15224	-	-	5e-7	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.01	2e-1	36	Contig11665_at	Contig11665	-	-	3e+0	At3g50880	HhH-GPD base excision DNA repair family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig20642_at	Contig20642	-	-	5e-1	At5g07780	formin homology 2 domain-containing protein / FH2 domain-containing protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig1161_at	Contig1161	-	-	1e-16	At1g07790	HTB1	C.G.	S.X.	Please select
0.03	8e-1	34	HV_CEa0002A03r2_at	HV_CEa0002A03r2	-	-	8e+0	At4g23080	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	HC113G05_SK_at	HC113G05_SK	-	-	1e+0	At4g14342	pre-mRNA splicing factor 10 kDa subunit, putative	C.G.	S.X.	Please select
0.02	8e-1	34	Contig6474_s_at	Contig6474	-	-	4e-11	At5g13720	-	C.G.	S.X.	Please select
0.01	8e-1	34	Contig2876_at	Contig2876	-	-	5e-2	At5g17120	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-6	54	Glycine max	Gma.5760.2.S1_at	BQ298381	-	-	2e+0	At3g18518	RTFL20 (ROTUNDIFOLIA LIKE 20)	C.G.	S.X.	Please select
0.52	4e-55	216	Oryza sativa	Os.39087.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	4e-8	59	Populus trichocarpa	PtpAffx.23456.1.S1_at	CV275692	hypothetical protein	-	2e+0	At1g78780	pathogenesis-related family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	2e-172	605	Triticum aestivum	Ta.12996.2.S1_at	CK217712	-	-	1e-2	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.07	6e-7	54	Vitis vinifera	1612518_at	CF372327	hypothetical protein LOC100243598	-	2e-30	At1g78780	pathogenesis-related family protein	C.G.	S.X.	Please select
0.47	2e-96	351	Zea mays	Zm.4203.1.A1_at	CK347632	pathogen-related protein	-	7e+0	At4g16610	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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