Gene omics information

Query gene ID	Contig5580_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5580_s_at	Contig5580	-	-	7e-11	At5g01990	auxin efflux carrier family protein	S.X.	H.G.	Please select
0.25	28.9	Contig3821_s_at	Contig3821	-	-	3e-1	At5g34830	unknown protein	S.X.	H.G.	Please select
0.05	4.1	HU14O14u_s_at	HU14O14u	-	-	5e-2	At3g05020	ACP1 (acyl carrier protein 1)	S.X.	H.G.	Please select
0.02	1.8	Contig15513_at	Contig15513	-	-	9e+0	At5g27889	unknown protein	S.X.	H.G.	Please select
0.02	1.8	Contig3610_s_at	Contig3610	-	-	2e-11	At3g47520	MDH (MALATE DEHYDROGENASE)	S.X.	H.G.	Please select
0.01	1.1	Contig3124_at	Contig3124	-	-	8e-32	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.0	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0	97.9	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.9	97.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.1	96.2	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.0	96.0	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	737	Contig5581_at	Contig5581	-	-	2e-5	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig15998_at	Contig15998	-	-	4e-1	At1g58380	XW6	C.G.	S.X.	Please select
0.01	5e-1	36	Contig10712_at	Contig10712	-	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig7569_at	Contig7569	-	-	9e-7	At1g16190	DNA repair protein RAD23, putative	C.G.	S.X.	Please select
0.01	2e+0	34	HVSMEn0020J21r2_s_at	HVSMEn0020J21r2	-	-	7e+0	At1g16225	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8104_at	Contig8104	-	-	1e-3	At3g26932	DRB3 (dsRNA-binding protein 3)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig14249_at	Contig14249	-	-	4e-1	At1g52940	PAP5 (PURPLE ACID PHOSPHATASE 5)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6929_at	Contig6929	-	-	3e-19	At3g46920	protein kinase family protein	C.G.	S.X.	Please select
0.01	2e+0	34	HVSMEn0020J21r2_at	HVSMEn0020J21r2	-	-	7e+0	At1g16225	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	7e-11	69	Arabidopsis thaliana	At5g01990	830729	auxin efflux carrier family protein	F:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	PsAffx.psHB029xP23f_at	PsAffx.psHB029xP23f	-	-	4e+0	At4g08685	SAH7	C.G.	S.X.	Please select
0.52	0	676	Oryza sativa	Os.38376.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	6e-9	63	Populus trichocarpa	PtpAffx.219829.1.S1_at	pmrna35973	hypothetical protein	-	1e-57	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	0	1277	Triticum aestivum	Ta.12796.1.S1_s_at	BE430492	-	-	8e-16	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.11	2e-5	50	Vitis vinifera	1611919_at	CB919145	hypothetical protein LOC100246780	-	4e-14	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zea mays	Zm.12003.1.S1_at	CF630358	hypothetical protein LOC100273558	-	6e-3	At5g54250	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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