Gene omics information

Query gene ID	Contig5492_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	S.X.	H.G.	Please select
0.83	94.0	Contig5260_s_at	Contig5260	-	-	0	At2g29630	THIC (ThiaminC)	S.X.	H.G.	Please select
0.80	92.5	Contig7652_at	Contig7652	-	-	3e-3	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	S.X.	H.G.	Please select
0.67	84.7	Contig5301_at	Contig5301	-	-	1e-43	At4g38130	HD1 (HISTONE DEACETYLASE 1)	S.X.	H.G.	Please select
0.67	84.7	Contig3018_at	Contig3018	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	S.X.	H.G.	Please select
0.57	74.9	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
8.2	98.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
8.0	98.7	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
7.9	98.7	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
7.8	98.6	GSM160744	drought control rep2	GSE6990	Barley drought stress
7.3	98.5	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
7.0	98.4	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.6	98.2	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.4	98.1	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.0	97.9	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-3	42	Contig25064_at	Contig25064	-	-	1e+0	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.03	3e-3	42	Contig4545_s_at	Contig4545	-	-	2e+0	At5g02020	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11170_at	Contig11170	-	-	7e+0	At4g21740	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig15337_at	Contig15337	-	-	1e-2	At4g21366	ATP binding / protein tyrosine kinase	C.G.	S.X.	Please select
0.01	2e-1	36	Contig14170_at	Contig14170	-	-	7e-1	At3g58000	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig7857_s_at	Contig7857	-	-	1e-3	At3g06850	BCE2	C.G.	S.X.	Please select
0.01	2e-1	36	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig17571_at	Contig17571	-	-	4e-1	At4g22666	-	C.G.	S.X.	Please select
0.03	9e-1	34	HO12F07S_at	HO12F07S	-	-	3e+0	At5g48170	SLY2 (SLEEPY2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-7	57	Arabidopsis thaliana	At3g44890	823623	RPL9 (RIBOSOMAL PROTEIN L9)	Plastid ribosomal protein CL9	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	4e-8	59	Glycine max	Gma.15874.1.S1_at	CD397659	-	-	3e-18	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.37	1e-67	258	Oryza sativa	Os02g0822600	AK060728.1	-	50S ribosomal protein L9, chloroplast precursor(CL13)	2e+0	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	6e-4	46	Populus trichocarpa	PtpAffx.53128.1.S1_at	CV238625	-	-	7e-25	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.83	0	920	Triticum aestivum	Ta.14183.1.S1_at	AY123421.1	hypothetical LOC543077	-	2e-3	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.14	9e-12	69	Vitis vinifera	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.14	9e-16	83	Zea mays	Zm.8900.1.A1_at	CK827399	hypothetical protein LOC100272787	-	2e-13	At1g11750	CLPP6	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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