Gene omics information

Query gene ID	Contig5489_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig5489_at	Contig5489	-	-	7e-64	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please select
0.60	77.3	Contig865_3_s_at	Contig865_3	-	-	0			S.X.	H.G.	Please select
0.50	66.9	HU11D20u_s_at	HU11D20u	-	-	9e-1	At2g45060	-	S.X.	H.G.	Please select
0.47	62.2	Contig11338_at	Contig11338	-	-	2e-4	At5g58490	cinnamoyl-CoA reductase family	S.X.	H.G.	Please select
0.24	27.2	Contig9853_at	Contig9853	-	-	3e+0	At5g12140	ATCYS1 (A. thaliana cystatin-1)	S.X.	H.G.	Please select
0.20	21.1	Contig10012_at	Contig10012	-	-	6e-8	At5g24630	BIN4 (brassinosteroid-insensitive4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.8	97.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
5.4	97.5	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
4.9	97.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	0	660	HV_CEb0015P21f_s_at	HV_CEb0015P21f	-	-	5e-2	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.14	4e-14	79	Contig5493_at	Contig5493	-	-	8e-14	At4g00570	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.01	6e-1	36	Contig11327_at	Contig11327	-	-	3e+1	At5g11140	-	C.G.	S.X.	Please select
0.01	6e-1	36	Contig4227_at	Contig4227	-	-	9e-5	At1g11360	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	6e-1	36	Contig4226_at	Contig4226	-	-	1e-11	At1g11360	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11035_at	Contig11035	-	-	2e+0	At3g09860	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5396_at	Contig5396	-	-	2e-23	At5g56140	KH domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5159_at	Contig5159	-	-	1e-23	At5g17440	LUC7 N_terminus domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Contig3657_s_at	Contig3657	-	-	5e+0	At5g55570	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	7e-64	246	Arabidopsis thaliana	At2g13560	815842	malate oxidoreductase, putative	F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	1e-50	202	Glycine max	GmaAffx.11325.1.S1_at	AW351168	-	-	2e-53	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.69	0	1031	Oryza sativa	Os07g0496200	AK061706.1	-	NAD-dependent malic enzyme 62 kDa isoform,mitochondrial precursor (EC 1.1.1.39) (NAD-ME)	3e-48	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	3e-110	400	Populus trichocarpa	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.88	0	3659	Triticum aestivum	Ta.7720.1.S1_a_at	AJ612921	-	-	1e-56	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.07	1e-28	127	Vitis vinifera	1621510_at	CF405481	-	-	9e-29	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.46	0	720	Zea mays	Zm.3666.1.A1_at	BG873898	hypothetical protein LOC100191942	-	1e-2	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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