CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5475_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 74.9 Contig5475_at Contig5475 - - 5e+0 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.77 90.8 Contig10661_at Contig10661 - - 2e+0 At3g15680 zinc finger (Ran-binding) family protein S.X. H.G.
0.57 74.9 Contig2343_s_at Contig2343 - - 1e+0 At5g26010 catalytic/ protein serine/threonine phosphatase S.X. H.G.
0.55 72.0 Contig6865_at Contig6865 - - 2e-7 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) S.X. H.G.
0.55 72.0 Contig11477_at Contig11477 - - 8e-5 At1g79040 PSBR (photosystem II subunit R) S.X. H.G.
0.44 58.9 Contig7360_at Contig7360 - - 3e+0 At4g19620 unknown protein S.X. H.G.
0.30 37.0 Contig1512_at Contig1512 - - 0 At5g12250 TUB6 (BETA-6 TUBULIN) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.9 99.9 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
26.1 99.8 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
23.7 99.8 GSM146361 Golden Promise Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
23.5 99.8 GSM146364 Maythorpe Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
23.4 99.8 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
23.3 99.8 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
22.8 99.8 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.9 99.7 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
19.6 99.7 GSM146358 Golden Promise Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.3 99.7 GSM146360 Golden Promise Root Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1271 Contig5475_s_at Contig5475 - - 5e+0 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.86 0 902 Contig5474_at Contig5474 - - 5e+0 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.29 2e-44 178 Contig7967_at Contig7967 - - 5e+0 At5g15802 unknown protein C.G. S.X.
0.29 4e-39 161 Contig7968_at Contig7968 - - 3e-1 At3g53980 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.11 5e-23 107 Contig23122_at Contig23122 - - 5e+0 At1g71080 unknown protein C.G. S.X.
0.01 4e-2 38 Contig9426_at Contig9426 - - 2e-2 At5g51340 unknown protein C.G. S.X.
0.02 2e-1 36 Contig11626_at Contig11626 - - 4e-2 At3g50550 unknown protein C.G. S.X.
0.01 2e-1 36 Contig14111_at Contig14111 - - 1e-18 At5g22480 zinc finger (ZPR1-type) family protein C.G. S.X.
0.02 6e-1 34 Contig15445_at Contig15445 - - 3e-2 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e+0 32 Arabidopsis thaliana At5g05960 830481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P - - - C.G. S.X.
0.09 8e-6 52 Glycine max Gma.1243.1.S1_at AW311027 - - 2e-5 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.37 9e-99 361 Oryza sativa Os.12266.1.S1_at - - - 0 C.G. S.X.
0.08 1e-1 38 Populus trichocarpa Ptp.7248.1.S1_s_at CB239417 hypothetical protein - 8e-14 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.75 0 680 Triticum aestivum Ta.1968.1.S1_at CK194200 - - 2e+0 At3g55720 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1613720_at CF517170 hypothetical protein LOC100247854 - 4e+0 At5g57180 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) C.G. S.X.
0.27 1e-51 202 Zea mays Zm.1754.1.A1_a_at CF624874 lipid binding protein - 5e+0 At3g03750 SET domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage