Gene omics information

Query gene ID Contig5466_s_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5774.9Contig5466_s_atContig5466--3e-4At5g60460sec61beta family proteinS.X.H.G.
0.5572.0Contig16505_atContig16505--8e-7At2g19430transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.5066.9Contig6385_atContig6385--1e+0At2g02870kelch repeat-containing F-box family proteinS.X.H.G.
0.3138.6Contig6631_atContig6631--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinS.X.H.G.
0.3037.0rbah36k01_s_atrbah36k01--1e+0At3g04430anac049 (Arabidopsis NAC domain containing protein 49)S.X.H.G.
0.2935.5Contig17424_atContig17424--6e-6At5g16060-S.X.H.G.
0.2732.1Contig5187_atContig5187--3e-9At5g08420RNA bindingS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.398.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seeds
6.198.0GSM282035Malting_day4_Morex_rep1GSE11200Expression data from malting barley seeds
5.897.8GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seeds
5.397.4GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
5.397.4GSM282023Malting_day4_Merit_rep3GSE11200Expression data from malting barley seeds
5.297.4GSM282022Malting_day4_Merit_rep4GSE11200Expression data from malting barley seeds
5.097.2GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.897.0GSM146357Golden Promise Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.396.4GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.396.4GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seeds
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.860813Contig5466_atContig5466--3e-4At5g60460sec61beta family proteinC.G.S.X.
0.670781HZ42D16r_s_atHZ42D16r--4e-3At5g60460sec61beta family proteinC.G.S.X.
0.670781HZ42D16r_atHZ42D16r--4e-3At5g60460sec61beta family proteinC.G.S.X.
0.703e-154543EBem08_SQ002_D16_s_atEBem08_SQ002_D16--2e-4At5g60460sec61beta family proteinC.G.S.X.
0.411e-63242Contig5465_atContig5465--2e-4At5g60460sec61beta family proteinC.G.S.X.
0.276e-41167HS08H05u_atHS08H05u--2e-4At5g60460sec61beta family proteinC.G.S.X.
0.022e-136Contig12994_atContig12994--4e-5At1g14620DECOY (DECOY)C.G.S.X.
0.022e-136Contig9891_atContig9891--9e-10At5g19150carbohydrate kinase familyC.G.S.X.
0.022e-136Contig10964_atContig10964--9e-6At1g21790-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.093e-446Arabidopsis thalianaAt5g60460836167sec61beta family proteinF:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB---C.G.S.X.
0.174e-1789Glycine maxGma.5350.1.S1_s_atAW351218--6e-18At5g60460sec61beta family proteinC.G.S.X.
0.282e-53210Oryza sativaOs12g0103300AU222596-Protein transport protein SEC61 beta subunit4e-3At5g60460sec61beta family proteinC.G.S.X.
0.042e+034Populus trichocarpaPtpAffx.212309.1.S1_x_atpmrna24136hypothetical protein-2e+0At5g42990UBC18 (ubiquitin-conjugating enzyme 18)C.G.S.X.
0.602e-116418Triticum aestivumTa.13162.1.S1_atCK200289--5e-4At5g60460sec61beta family proteinC.G.S.X.
0.092e-1271Vitis vinifera1620903_atCF605711hypothetical protein LOC100260422-2e-12At5g60460sec61beta family proteinC.G.S.X.
0.282e-47188Zea maysZm.15216.1.A1_atBM335032protein transport protein Sec61 beta subunit-2e-2At5g60460sec61beta family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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