Gene omics information

Query gene ID	Contig5466_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	Contig5466_s_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.55	72.0	Contig16505_at	Contig16505	-	-	8e-7	At2g19430	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.50	66.9	Contig6385_at	Contig6385	-	-	1e+0	At2g02870	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.31	38.6	Contig6631_at	Contig6631	-	-	5e-1	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	S.X.	H.G.	Please select
0.30	37.0	rbah36k01_s_at	rbah36k01	-	-	1e+0	At3g04430	anac049 (Arabidopsis NAC domain containing protein 49)	S.X.	H.G.	Please select
0.29	35.5	Contig17424_at	Contig17424	-	-	6e-6	At5g16060	-	S.X.	H.G.	Please select
0.27	32.1	Contig5187_at	Contig5187	-	-	3e-9	At5g08420	RNA binding	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	813	Contig5466_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.67	0	781	HZ42D16r_s_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.67	0	781	HZ42D16r_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.70	3e-154	543	EBem08_SQ002_D16_s_at	EBem08_SQ002_D16	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.41	1e-63	242	Contig5465_at	Contig5465	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.27	6e-41	167	HS08H05u_at	HS08H05u	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12994_at	Contig12994	-	-	4e-5	At1g14620	DECOY (DECOY)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig9891_at	Contig9891	-	-	9e-10	At5g19150	carbohydrate kinase family	C.G.	S.X.	Please select
0.02	2e-1	36	Contig10964_at	Contig10964	-	-	9e-6	At1g21790	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-4	46	Arabidopsis thaliana	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	4e-17	89	Glycine max	Gma.5350.1.S1_s_at	AW351218	-	-	6e-18	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.28	2e-53	210	Oryza sativa	Os12g0103300	AU222596	-	Protein transport protein SEC61 beta subunit	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.212309.1.S1_x_at	pmrna24136	hypothetical protein	-	2e+0	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	2e-116	418	Triticum aestivum	Ta.13162.1.S1_at	CK200289	-	-	5e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.09	2e-12	71	Vitis vinifera	1620903_at	CF605711	hypothetical protein LOC100260422	-	2e-12	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.28	2e-47	188	Zea mays	Zm.15216.1.A1_at	BM335032	protein transport protein Sec61 beta subunit	-	2e-2	At5g60460	sec61beta family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage