Gene omics information

Query gene ID	Contig5466_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig5466_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.55	72.0	Contig1159_s_at	Contig1159	-	-	1e-4	At1g62540	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	S.X.	H.G.	Please select
0.40	53.1	Contig9727_at	Contig9727	-	-	5e-1	At5g25030	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	S.X.	H.G.	Please select
0.33	42.6	Contig4935_at	Contig4935	-	-	1e-4	At5g11650	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.30	37.0	Contig10043_at	Contig10043	-	-	8e-38	At5g13280	AK-LYS1 (ASPARTATE KINASE 1)	S.X.	H.G.	Please select
0.15	14.1	Contig423_at	Contig423	-	-	5e-5	At3g14600	60S ribosomal protein L18A (RPL18aC)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.4	99.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.1	98.4	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
6.8	98.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.7	98.3	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.1	98.0	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.0	97.9	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	813	Contig5466_s_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.67	0	781	HZ42D16r_s_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.67	0	781	HZ42D16r_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.70	3e-154	543	EBem08_SQ002_D16_s_at	EBem08_SQ002_D16	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.41	1e-63	242	Contig5465_at	Contig5465	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.27	6e-41	167	HS08H05u_at	HS08H05u	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12994_at	Contig12994	-	-	4e-5	At1g14620	DECOY (DECOY)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig9891_at	Contig9891	-	-	9e-10	At5g19150	carbohydrate kinase family	C.G.	S.X.	Please select
0.02	2e-1	36	Contig10964_at	Contig10964	-	-	9e-6	At1g21790	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-4	46	Arabidopsis thaliana	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	4e-17	89	Glycine max	Gma.5350.1.S1_s_at	AW351218	-	-	6e-18	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.28	2e-53	210	Oryza sativa	Os12g0103300	AU222596	-	Protein transport protein SEC61 beta subunit	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.212309.1.S1_x_at	pmrna24136	hypothetical protein	-	2e+0	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	2e-116	418	Triticum aestivum	Ta.13162.1.S1_at	CK200289	-	-	5e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.09	2e-12	71	Vitis vinifera	1620903_at	CF605711	hypothetical protein LOC100260422	-	2e-12	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.28	2e-47	188	Zea mays	Zm.15216.1.A1_at	BM335032	protein transport protein Sec61 beta subunit	-	2e-2	At5g60460	sec61beta family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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