Gene omics information

Query gene ID	Contig5465_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig5465_at	Contig5465	-	-	2e-4	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.33	42.6	Contig18674_at	Contig18674	-	-	5e-1	At1g67050	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig14639_at	Contig14639	-	-	8e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	S.X.	H.G.	Please select
0.22	24.2	Contig15745_at	Contig15745	-	-	1e-1	At1g35830	VQ motif-containing protein	S.X.	H.G.	Please select
0.20	21.1	Contig514_s_at	Contig514	ribosome-inactivating protein	-	5e-4	At5g15265	unknown protein	S.X.	H.G.	Please select
0.17	16.9	Contig21054_at	Contig21054	-	-	8e-9	At4g27270	quinone reductase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.8	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.3	98.8	GSM372947	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.0	98.7	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.2	98.5	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.1	98.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.1	98.4	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9	98.3	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.2	98.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	2e-86	317	HS08H05u_at	HS08H05u	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.42	9e-64	242	Contig5466_s_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.42	9e-64	242	Contig5466_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.35	5e-59	226	HZ42D16r_s_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.35	5e-59	226	HZ42D16r_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.37	1e-56	218	EBem08_SQ002_D16_s_at	EBem08_SQ002_D16	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.03	4e-4	44	Contig6718_s_at	Contig6718	-	-	1e-8	At5g40550	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	42	Contig8174_s_at	Contig8174	-	-	2e-12	At3g13550	FUS9 (FUSCA 9)	C.G.	S.X.	Please select
0.03	2e-3	42	Contig8174_at	Contig8174	-	-	2e-12	At3g13550	FUS9 (FUSCA 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-4	46	Arabidopsis thaliana	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	9e-17	87	Glycine max	Gma.5350.1.S1_s_at	AW351218	-	-	6e-18	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.34	5e-50	198	Oryza sativa	Os12g0103300	AU222596	-	Protein transport protein SEC61 beta subunit	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-2	40	Populus trichocarpa	PtpAffx.18075.1.S1_at	CV278430	-	-	2e-12	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	2e-103	375	Triticum aestivum	Ta.12797.1.S1_at	CA652314	-	-	4e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.09	3e-10	63	Vitis vinifera	1620903_at	CF605711	hypothetical protein LOC100260422	-	2e-12	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.34	7e-58	222	Zea mays	Zm.15216.1.A1_at	BM335032	protein transport protein Sec61 beta subunit	-	2e-2	At5g60460	sec61beta family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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