Gene omics information

Query gene ID	Contig5449_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig5449_at	Contig5449	-	-	2e-41	At3g05840	ATSK12	S.X.	H.G.	Please select
0.80	92.5	Contig22918_at	Contig22918	-	-	3e-1	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	S.X.	H.G.	Please select
0.61	78.7	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	S.X.	H.G.	Please select
0.61	78.7	Contig7590_at	Contig7590	-	-	7e-1	At1g55580	LAS (Lateral Suppressor)	S.X.	H.G.	Please select
0.46	61.0	Contig17213_at	Contig17213	-	-	1e+0	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	S.X.	H.G.	Please select
0.42	55.2	Contig154_at	Contig154	-	-	4e-4	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	99.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.7	98.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
7.9	98.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.3	98.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.4	96.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	5e-121	434	Contig2294_at	Contig2294	-	-	1e-34	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please select
0.35	1e-44	180	Contig5540_at	Contig5540	-	-	1e-52	At3g05840	ATSK12	C.G.	S.X.	Please select
0.21	9e-18	91	Contig4411_at	Contig4411	-	-	3e-56	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	C.G.	S.X.	Please select
0.08	5e-16	85	Contig12188_s_at	Contig12188	-	-	3e-23	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	C.G.	S.X.	Please select
0.20	2e-6	54	Contig9035_at	Contig9035	-	-	1e-95	At1g06390	GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig17636_at	Contig17636	-	-	3e-2	At1g09770	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)	C.G.	S.X.	Please select
0.02	4e-1	36	Contig23093_at	Contig23093	-	-	5e-25	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig11345_at	Contig11345	-	-	1e-1	At5g05420	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.01	4e-1	36	Contig10783_s_at	Contig10783	-	-	5e-26	At5g63440	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	2e-41	171	Arabidopsis thaliana	At3g05840	819753	ATSK12	encodes a SHAGGY-like kinase involved in meristem organization.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	3e-94	347	Glycine max	Gma.4193.1.S1_at	AW705861	-	-	3e-133	At5g26751	ATSK11	C.G.	S.X.	Please select
0.60	0	1360	Oryza sativa	Os05g0134000	AK121623.1	-	Shaggy-related protein kinase alpha (EC 2.7.1.-)(ASK-alpha)	4e-34	At3g05840	ATSK12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	1e-49	198	Populus trichocarpa	PtpAffx.147982.1.S1_s_at	BI136334	hypothetical protein	-	2e-115	At5g26751	ATSK11	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.94	0	2763	Triticum aestivum	Ta.13447.1.S1_at	AF525086.1	GSK-like kinase	-	2e-45	At5g26751	ATSK11	C.G.	S.X.	Please select
0.36	2e-57	222	Vitis vinifera	1609191_s_at	CB978023	hypothetical protein LOC100258056	-	0	At5g26751	ATSK11	C.G.	S.X.	Please select
0.54	0	739	Zea mays	Zm.377.1.A1_at	AI714846	shaggy kinase homolog	-	2e-35	At5g26751	ATSK11	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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