Gene omics information

Query gene ID Contig5413_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7790.8Contig5413_atContig5413--4e-34At3g23340ckl10 (Casein Kinase I-like 10)S.X.H.G.
0.5572.0HA10D18u_atHA10D18u--2e-1At1g0110060S acidic ribosomal protein P1 (RPP1A)S.X.H.G.
0.5572.0Contig6192_atContig6192--6e+0Atmg00480-S.X.H.G.
0.4762.2Contig14508_s_atContig14508--4e-4At5g58060YKT61S.X.H.G.
0.3545.1HX12B17r_atHX12B17r--1e+0At2g34310unknown proteinS.X.H.G.
0.1818.2HT11A16u_x_atHT11A16u--2e+0At1g64080unknown proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.798.9GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.698.2GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.497.5GSM282027Malting_day1_Legacy_rep2GSE11200Expression data from malting barley seeds
5.097.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.596.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.196.2GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
3.895.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
3.595.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
3.595.1GSM238439Embryo 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
3.394.6GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.151e-23111Contig6177_atContig6177--6e-95At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)C.G.S.X.
0.124e-2099Contig5112_atContig5112--6e-45At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)C.G.S.X.
0.025e-446Contig10200_atContig10200--9e-35At4g28880ckl3 (Casein Kinase I-like 3)C.G.S.X.
0.015e-136Contig6240_atContig6240--2e-14At3g01090AKIN10 (Arabidopsis SNF1 kinase homolog 10)C.G.S.X.
0.012e+034Contig18130_atContig18130--3e-2At2g3760060S ribosomal protein L36 (RPL36A)C.G.S.X.
0.012e+034Contig11654_atContig11654--8e-7At1g22610C2 domain-containing proteinC.G.S.X.
0.012e+034HV_CEa0011G08r2_x_atHV_CEa0011G08r2--1e+0At3g25265LCR4 (Low-molecular-weight cysteine-rich 4)C.G.S.X.
0.012e+034Contig11056_atContig11056--1e-4At4g01883-C.G.S.X.
0.018e+032U19359_s_atU19359--1e-2At3g48340cysteine-type endopeptidase/ cysteine-type peptidaseC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.334e-34147Arabidopsis thalianaAt3g23340821915ckl10 (Casein Kinase I-like 10)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA---C.G.S.X.
0.232e-49198Glycine maxGmaAffx.45359.2.S1_atBQ453165--1e-60At4g28540CKL6 (CASEIN KINASE I-LIKE 6)C.G.S.X.
0.5701138Oryza sativaOs02g0622100AK101388.1-Dual specificity kinase 13e-47At4g14340CKI1 (CASEIN KINASE I)C.G.S.X.
0.322e-49198Populus trichocarpaPtpAffx.75129.2.S1_s_atCF231604hypothetical protein-9e-120At3g23340ckl10 (Casein Kinase I-like 10)C.G.S.X.
0.5901223Triticum aestivumTa.1594.1.S1_atBJ286274--3e-9At5g44100ckl7 (Casein Kinase I-like 7)C.G.S.X.
0.345e-80297Vitis vinifera1610674_atCF511328hypothetical protein LOC100242639-2e-158At3g23340ckl10 (Casein Kinase I-like 10)C.G.S.X.
0.388e-120430Zea maysZm.14358.1.A1_atCA402172hypothetical protein LOC100217181-2e-10At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage