Gene omics information

Query gene ID	Contig5409_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig5409_at	Contig5409	-	-	3e-18	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.63	80.3	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.55	72.0	Contig19041_at	Contig19041	-	-	5e+0	At4g22850	-	S.X.	H.G.	Please select
0.50	66.9	Contig7155_at	Contig7155	-	-	3e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	S.X.	H.G.	Please select
0.50	66.9	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select
0.44	58.9	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.9	99.7	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
18.3	99.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
12.4	99.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	HVSMEf0001K20r2_at	HVSMEf0001K20r2	-	-	4e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig4619_at	Contig4619	-	-	2e+0	At3g44140	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig26172_at	Contig26172	-	-	1e+0	At1g56010	NAC1	C.G.	S.X.	Please select
0.02	3e-1	36	Contig4620_at	Contig4620	-	-	5e+0	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig3050_at	Contig3050	-	-	2e-3	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig8716_at	Contig8716	-	-	3e-5	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig15100_at	Contig15100	-	-	3e+0	At5g67190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig7593_at	Contig7593	-	-	6e-7	At3g61070	PEX11E	C.G.	S.X.	Please select
0.02	3e-1	36	Contig7169_at	Contig7169	-	-	4e-14	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-18	93	Arabidopsis thaliana	At3g02580	820679	STE1 (STEROL 1)	Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step. Mutant has dwarf phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	5e-2	40	Glycine max	GmaAffx.41064.1.S1_at	BF425767	-	-	5e-8	At3g02590	delta 7-sterol-C5-desaturase, putative	C.G.	S.X.	Please select
0.64	1e-123	444	Oryza sativa	Os01g0134500	AK111908.1	-	Delta-7-sterol-C5(6)-desaturase (EC 1.3.3.-)(Delta-7-C-5 sterol desaturase)(Delta7-sterol-C5-desaturase)	3e-3	At3g02580	STE1 (STEROL 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	6e-20	99	Populus trichocarpa	PtpAffx.42195.1.S1_at	CV225799	hypothetical protein	-	2e-47	At3g02580	STE1 (STEROL 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	0	1285	Triticum aestivum	Ta.12457.1.S1_x_at	BT009523.1	-	-	6e-23	At3g02580	STE1 (STEROL 1)	C.G.	S.X.	Please select
0.15	7e-7	54	Vitis vinifera	1616851_at	CF202152.1	hypothetical protein LOC100265283	-	5e-15	At3g02580	STE1 (STEROL 1)	C.G.	S.X.	Please select
0.47	4e-83	307	Zea mays	Zm.5670.1.A1_at	CF635274	delta-7-sterol-C5	-	8e-13	At3g02580	STE1 (STEROL 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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