Gene omics information

Query gene ID	Contig5399_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig5399_at	Contig5399	-	-	4e-27	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	S.X.	H.G.	Please select
0.67	84.7	HD07I22r_s_at	HD07I22r	-	-	5e+0	At4g21090	adrenodoxin-like ferredoxin 1	S.X.	H.G.	Please select
0.40	53.1	Contig3810_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	S.X.	H.G.	Please select
0.27	32.1	Contig12013_s_at	Contig12013	-	-	3e+0	At5g38080	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig3338_s_at	Contig3338	-	-	8e-4	At3g23080	-	S.X.	H.G.	Please select
0.18	18.2	Contig7559_at	Contig7559	-	-	4e-43	At3g26560	ATP-dependent RNA helicase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.6	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.4	96.6	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.0	96.0	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.8	95.7	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.4	94.8	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.4	94.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-115	416	Contig5398_s_at	Contig5398	-	-	7e+0	Atmg01220	-	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5377_at	Contig5377	-	-	8e-1	At4g36250	ALDH3F1 (Aldehyde Dehydrogenase 3F1)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig14083_at	Contig14083	-	-	7e-9	At4g29130	HXK1 (HEXOKINASE 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig4491_s_at	Contig4491	-	-	7e-1	At5g45410	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11380_at	Contig11380	-	-	1e-8	At1g64880	ribosomal protein S5 family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig16091_at	Contig16091	-	-	4e-2	At3g03750	SET domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig14555_s_at	Contig14555	-	-	2e-2	At1g73630	calcium-binding protein, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig20603_at	Contig20603	-	-	2e+0	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig2814_at	Contig2814	-	-	1e-14	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	4e-27	123	Arabidopsis thaliana	At2g20860	816619	LIP1 (LIPOIC ACID SYNTHASE 1)	LIP1,Lipoic acid synthase,	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	3e-35	151	Glycine max	Gma.3319.1.S1_at	BQ298314	-	-	1e-58	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	C.G.	S.X.	Please select
0.64	0	1033	Oryza sativa	Os04g0455800	AK120652.1	-	Lipoic acid synthetase, mitochondrial precursor(Lip-syn) (Lipoate synthase) (mLIP1)	6e-51	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	4e-37	157	Populus trichocarpa	PtpAffx.153087.1.A1_at	CV270782	-	-	2e-46	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.84	0	2113	Triticum aestivum	Ta.13745.1.S1_at	BQ743998	-	-	2e-29	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	C.G.	S.X.	Please select
0.37	3e-68	258	Vitis vinifera	1621627_at	CF607711	hypothetical protein LOC100251365	-	2e-43	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	C.G.	S.X.	Please select
0.64	0	932	Zea mays	Zm.6442.1.S1_at	CK370898	hypothetical protein LOC100279807	-	2e-32	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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