CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5368_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.9 Contig5368_at Contig5368 - - 2e+0 At3g46150 unknown protein S.X. H.G.
0.67 84.7 Contig13783_at Contig13783 - - 4e-1 At2g41225 unknown protein S.X. H.G.
0.53 69.7 Contig6826_s_at Contig6826 - - 8e-1 At2g15535 LCR10 (Low-molecular-weight cysteine-rich 10) S.X. H.G.
0.50 66.9 Contig13988_at Contig13988 - - 5e-4 At4g24020 NLP7 (NIN LIKE PROTEIN 7) S.X. H.G.
0.37 47.9 Contig12434_at Contig12434 - - 2e-6 At4g30930 NFD1 (NUCLEAR FUSION DEFECTIVE 1) S.X. H.G.
0.36 47.1 Contig6981_at Contig6981 - - 4e-5 At4g00170 vesicle-associated membrane family protein / VAMP family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.7 100.0 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
25.9 99.8 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
18.4 99.7 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
16.9 99.6 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.8 99.6 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
16.2 99.6 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
16.0 99.6 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.0 99.6 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.9 99.6 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.1 99.5 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.73 0 734 Contig5369_at Contig5369 - - 1e-1 At3g46150 unknown protein C.G. S.X.
0.04 7e-1 34 HW08E09u_at HW08E09u - - 1e+1 At5g03230 unknown protein C.G. S.X.
0.01 3e+0 32 Contig11455_at Contig11455 - - 1e-2 At3g18165 MOS4 (Modifier of snc1,4) C.G. S.X.
0.02 3e+0 32 HV_CEa0006M06r2_s_at HV_CEa0006M06r2 - - 4e+0 At1g18250 ATLP-1 C.G. S.X.
0.01 3e+0 32 Contig15864_at Contig15864 - - 5e-11 At1g68710 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.02 3e+0 32 Contig5216_at Contig5216 - - 2e+0 At5g13180 ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83) C.G. S.X.
0.01 3e+0 32 Contig3181_at Contig3181 - - 4e-16 At5g67030 ABA1 (ABA DEFICIENT 1) C.G. S.X.
0.02 3e+0 32 Contig23998_at Contig23998 - - 4e+0 At3g21150 zinc finger (B-box type) family protein C.G. S.X.
0.03 3e+0 32 EBro02_SQ002_C17_s_at EBro02_SQ002_C17 - - 5e-2 At3g28857 transcription regulator C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At3g46150 823758 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 1e-1 38 Glycine max PsAffx.psHB019xB20f_at PsAffx.psHB019xB20f - - 8e-1 At2g03110 RNA binding / nucleic acid binding C.G. S.X.
0.50 5e-107 389 Oryza sativa Os03g0300400 AF395880.1 - Pathogen-related protein (JIOsPR10) 1e-1 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.03 1e-1 38 Populus trichocarpa Ptp.3691.1.S1_at DN488289 hypothetical protein - 7e-6 At3g58000 VQ motif-containing protein C.G. S.X.
0.61 1e-133 476 Triticum aestivum Ta.4328.1.S1_x_at BJ277748 - - 6e+0 At1g32560 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1619773_at CD721459 hypothetical protein LOC100251617 - 5e+0 At4g31290 ChaC-like family protein C.G. S.X.
0.41 8e-90 329 Zea mays Zm.1967.1.A1_at BG836522 pathogenesis-related protein 10 /// pathogenesis-related protein 1 - 1e-23 At1g77180 chromatin protein family C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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