CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5337_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig5337_at Contig5337 - - 7e-1 At5g64250 2-nitropropane dioxygenase family / NPD family S.X. H.G.
0.44 58.9 Contig21096_at Contig21096 - - 5e+0 At3g12930 - S.X. H.G.
0.42 55.2 HV_CEa0003B14r2_at HV_CEa0003B14r2 - - 8e-1 At4g24026 unknown protein S.X. H.G.
0.38 49.5 Contig9075_s_at Contig9075 - - 1e-1 At5g59990 - S.X. H.G.
0.32 40.3 Contig13636_at Contig13636 - - 9e-3 At2g25650 DNA-binding storekeeper protein-related S.X. H.G.
0.22 24.2 Contig26498_at Contig26498 - - 2e-2 At4g00960 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.5 99.5 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
12.4 99.4 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
9.5 99.0 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
9.3 99.0 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
8.9 98.9 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
8.8 98.9 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.6 98.8 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.4 98.5 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
7.0 98.4 GSM372985 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2 98.0 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 36 Contig11160_at Contig11160 - - 4e-3 At5g47240 atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8) C.G. S.X.
0.02 3e-1 36 Contig5896_at Contig5896 - - 3e-5 At3g02770 dimethylmenaquinone methyltransferase family protein C.G. S.X.
0.02 3e-1 36 Contig13415_at Contig13415 - - 1e+0 At3g01513 unknown protein C.G. S.X.
0.02 3e-1 36 Contig20754_at Contig20754 - - 5e+0 At5g41960 unknown protein C.G. S.X.
0.01 3e-1 36 Contig12178_at Contig12178 - - 3e-3 At3g06490 MYB108 (myb domain protein 108) C.G. S.X.
0.01 3e-1 36 Contig11014_at Contig11014 - - 9e-7 At3g51130 unknown protein C.G. S.X.
0.01 3e-1 36 Contig4720_at Contig4720 - - 2e-24 At2g28000 CPN60A (CHAPERONIN-60ALPHA) C.G. S.X.
0.01 1e+0 34 Contig4833_at Contig4833 - - 2e-17 At2g19940 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization C.G. S.X.
0.01 1e+0 34 Contig13832_at Contig13832 - - 8e+0 At5g40981 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-1 36 Arabidopsis thaliana At5g64250 836546 2-nitropropane dioxygenase family / NPD family F:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMA - - - C.G. S.X.
0.07 2e-1 38 Glycine max GmaAffx.67686.2.S1_at BI472192 - - 1e+1 At5g22791 - C.G. S.X.
0.48 0 656 Oryza sativa Os08g0485400 AK100705.1 - 2-nitropropane dioxygenase-like protein 7e-2 At5g64250 2-nitropropane dioxygenase family / NPD family C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.98849.1.S1_s_at BU820294 hypothetical protein - 1e-49 At5g41260 protein kinase family protein C.G. S.X.
0.77 0 1705 Triticum aestivum Ta.6099.1.S1_at CA667895 - - 5e-2 At5g64250 2-nitropropane dioxygenase family / NPD family C.G. S.X.
0.05 1e-8 59 Vitis vinifera 1609567_at CF604738 hypothetical protein LOC100241045 - 1e-3 At5g64250 2-nitropropane dioxygenase family / NPD family C.G. S.X.
0.03 1e+0 34 Zea mays Zm.9315.1.S1_at AW225214 hypothetical protein LOC100274732 - 2e-5 At4g39235 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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