Gene omics information

Query gene ID	Contig5316_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5316_at	Contig5316	-	-	5e-1	At1g11572	-	S.X.	H.G.	Please select
0.61	78.7	Contig18051_at	Contig18051	-	-	4e-1	At1g75250	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	S.X.	H.G.	Please select
0.50	66.9	EBma03_SQ003_G07_s_at	EBma03_SQ003_G07	-	-	2e+0	At3g30220	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HS09L19u_s_at	HS09L19u	-	-	2e+0	At3g30220	unknown protein	S.X.	H.G.	Please select
0.44	58.9	HA31E10r_s_at	HA31E10r	-	-	1e+0	At4g15620	integral membrane family protein	S.X.	H.G.	Please select
0.32	40.3	Contig16840_at	Contig16840	-	-	4e-1	At5g22545	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.2	99.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	854	Contig5317_s_at	Contig5317	-	-	6e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.56	0	854	Contig5317_at	Contig5317	-	-	6e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4949_at	Contig4949	-	-	3e-53	At5g13000	ATGSL12 (glucan synthase-like 12)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7529_at	Contig7529	-	-	5e-5	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig6571_at	Contig6571	-	-	6e-10	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Contig10694_at	Contig10694	-	-	8e-1	At1g11112	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11761_at	Contig11761	-	-	2e-1	At3g61490	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9879_at	Contig9879	-	-	4e-1	At1g64000	WRKY56	C.G.	S.X.	Please select
0.02	4e+0	32	Contig15751_at	Contig15751	-	-	1e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At1g11572	5007683	-	Encodes a Plant thionin family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	GmaAffx.49930.1.S1_at	BG404883	-	-	3e+0	At2g13820	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.30	5e-52	206	Oryza sativa	Os09g0495200	AK102989.1	-	Hypothetical protein	2e+0	At5g35090	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-1	36	Populus trichocarpa	PtpAffx.201446.1.S1_at	pmrna2854	hypothetical protein	-	5e-1	At2g24090	ribosomal protein L35 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	0	793	Triticum aestivum	Ta.25570.1.S1_at	CD452829	-	-	2e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1622388_at	CF568932	-	-	4e-3	At1g34780	ATAPRL4 (APR-like 4)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	ZmAffx.1064.1.A1_at	AI881965	-	-	8e-1	At5g44450	methyltransferase	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage