CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5301_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig5301_at Contig5301 - - 1e-43 At4g38130 HD1 (HISTONE DEACETYLASE 1) S.X. H.G.
0.91 98.1 Contig5492_at Contig5492 - - 1e-7 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) S.X. H.G.
0.83 94.0 Contig5260_s_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) S.X. H.G.
0.80 92.5 Contig7652_at Contig7652 - - 3e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) S.X. H.G.
0.67 84.7 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) S.X. H.G.
0.57 74.9 Contig20916_at Contig20916 - - 3e-1 At5g66160 JR700 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 95.8 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.7 95.5 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.4 94.8 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3 94.6 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.3 94.6 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.1 94.1 GSM419972 Lemma_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.1 94.1 GSM440957 Control lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
2.9 93.4 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8 93.1 GSM440967 Stressed palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
2.8 93.1 GSM261064 Xantha s-46 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-2 40 Contig6525_at Contig6525 - - 1e-3 At5g62640 proline-rich family protein C.G. S.X.
0.02 3e-2 40 Contig14748_at Contig14748 - - 5e+0 At4g02482 chloroplast outer envelope GTP-binding protein, putative C.G. S.X.
0.02 1e-1 38 Contig12356_at Contig12356 - - 2e-6 At1g20000 TAF11b (TBP-ASSOCIATED FACTOR 11b) C.G. S.X.
0.02 1e-1 38 EBro08_SQ012_K01_s_at EBro08_SQ012_K01 - - 6e-1 At1g76820 GTP binding / GTPase C.G. S.X.
0.01 1e-1 38 Contig22697_at Contig22697 - - 9e+0 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.01 1e-1 38 Contig14085_at Contig14085 - - 3e+0 At5g08060 unknown protein C.G. S.X.
0.01 4e-1 36 Contig14925_at Contig14925 - - 1e-1 At1g27390 TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) C.G. S.X.
0.02 4e-1 36 EBro02_SQ008_L16_at EBro02_SQ008_L16 - - 1e+0 At1g65484 unknown protein C.G. S.X.
0.01 4e-1 36 Contig14149_at Contig14149 - - 4e-9 At4g36980 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 1e-43 178 Arabidopsis thaliana At4g38130 829969 HD1 (HISTONE DEACETYLASE 1) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. - - - C.G. S.X.
0.34 1e-49 198 Glycine max GmaAffx.58612.1.S1_at BM954406 - - 6e-19 At5g63110 HDA6 (HISTONE DEACETYLASE 6) C.G. S.X.
0.68 0 1051 Oryza sativa Os06g0583400 AF513382.1 - Histone deacetylase HDAC1 6e-61 At4g38130 HD1 (HISTONE DEACETYLASE 1) C.G. S.X.
0.26 2e-33 145 Populus trichocarpa PtpAffx.6033.1.S1_at CA932145 histone deacetylase - 2e-91 At4g38130 HD1 (HISTONE DEACETYLASE 1) C.G. S.X.
0.91 0 2779 Triticum aestivum Ta.23826.1.S1_at BT009381.1 Histone deacetylase HDAC3 - 3e-41 At4g38130 HD1 (HISTONE DEACETYLASE 1) C.G. S.X.
0.13 6e-24 111 Vitis vinifera 1614482_at CF206009.1 hypothetical protein LOC100241833 - 2e-21 At4g38130 HD1 (HISTONE DEACETYLASE 1) C.G. S.X.
0.58 0 1338 Zea mays Zm.398.1.S1_at AF384032.1 histone deacetylase HDA101 /// RPD3 histone deacetylase homolog - 1e-30 At4g38130 HD1 (HISTONE DEACETYLASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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