Gene omics information

Query gene ID	Contig5297_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	S.X.	H.G.	Please select
0.91	98.1	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.80	92.5	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	S.X.	H.G.	Please select
0.71	87.1	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select
0.67	84.7	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	S.X.	H.G.	Please select
0.61	78.7	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.9	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	0	1019	Contig5296_s_at	Contig5296	-	-	4e-25	At1g64550	ATGCN3	C.G.	S.X.	Please select
0.34	0	1019	Contig5296_at	Contig5296	-	-	4e-25	At1g64550	ATGCN3	C.G.	S.X.	Please select
0.05	2e-1	36	HT05K24u_at	HT05K24u	-	-	4e+0	At4g26520	fructose-bisphosphate aldolase, cytoplasmic	C.G.	S.X.	Please select
0.02	2e-1	36	Contig7471_at	Contig7471	-	-	9e-3	At4g26930	MYB97 (myb domain protein 97)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig7226_at	Contig7226	-	-	2e-21	At3g54540	ATGCN4	C.G.	S.X.	Please select
0.02	7e-1	34	Contig10978_at	Contig10978	-	-	5e-14	At1g13270	MAP1C (METHIONINE AMINOPEPTIDASE 1B)	C.G.	S.X.	Please select
0.02	7e-1	34	Contig13110_at	Contig13110	-	-	4e-7	At4g16430	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Contig13109_s_at	Contig13109	-	-	3e+0	At5g18880	-	C.G.	S.X.	Please select
0.03	7e-1	34	Contig13109_at	Contig13109	-	-	3e+0	At5g18880	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	4e-16	85	Arabidopsis thaliana	At1g64550	842763	ATGCN3	member of GCN subfamily	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	4e-14	79	Glycine max	Gma.4290.1.S1_at	AF420435.1	ABC transporter-like protein	-	2e-101	At1g64550	ATGCN3	C.G.	S.X.	Please select
0.29	3e-108	393	Oryza sativa	Os02g0826500	AK099841.1	-	ATPase components of ABC transporters withduplicated ATPase domains	1e-45	At1g64550	ATGCN3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	1e-17	91	Populus trichocarpa	Ptp.6892.1.S1_at	DN499828	ABC transporter family protein	-	2e-108	At1g64550	ATGCN3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	5e-99	361	Triticum aestivum	TaAffx.25350.1.S1_at	CA701813	-	-	3e-13	At1g64550	ATGCN3	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1618309_at	CB968982	AP1-like protein	-	6e+0	At2g02050	NADH-ubiquinone oxidoreductase B18 subunit, putative	C.G.	S.X.	Please select
0.27	3e-101	367	Zea mays	Zm.4768.1.A1_at	AY107116.1	hypothetical protein LOC100192636	-	5e-30	At1g64550	ATGCN3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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