CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5275_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 89.1 Contig5275_at Contig5275 - - 3e-22 At3g13510 unknown protein S.X. H.G.
0.50 66.9 Contig5277_at Contig5277 - - 4e-2 At3g17160 unknown protein S.X. H.G.
0.35 45.1 Contig2656_at Contig2656 - - 7e-9 At4g24690 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein S.X. H.G.
0.27 32.1 Contig26348_at Contig26348 - - 5e+0 At5g06040 self-incompatibility protein-related S.X. H.G.
0.20 21.1 HI04I05u_at HI04I05u - - 2e-2 At5g41060 zinc finger (DHHC type) family protein S.X. H.G.
0.16 15.3 HU09H10u_at HU09H10u - - 1e+1 At4g09647 - S.X. H.G.
0.13 11.6 Contig14413_at Contig14413 - - 1e-1 At4g12780 heat shock protein binding S.X. H.G.
0.11 9.4 Contig8650_at Contig8650 - - 5e-17 At4g11980 ATNUDX14 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.6 99.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
17.6 99.6 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
12.7 99.4 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.9 99.2 GSM146371 Golden Promise shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.7 99.2 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.3 99.0 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.9 98.9 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4 98.5 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4 98.5 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2 98.5 GSM146374 Golden Promise shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 0 1122 Contig5274_s_at Contig5274 - - 7e-12 At3g13510 unknown protein C.G. S.X.
0.25 2e-108 393 Contig5272_s_at Contig5272 - - 4e-1 At3g13510 unknown protein C.G. S.X.
0.25 2e-108 393 Contig5272_at Contig5272 - - 4e-1 At3g13510 unknown protein C.G. S.X.
0.25 3e-64 246 HVSMEn0019H03r2_at HVSMEn0019H03r2 - - 3e+0 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
0.04 1e-4 48 EBem05_SQ002_E15_at EBem05_SQ002_E15 - - 7e-1 At5g15610 proteasome family protein C.G. S.X.
0.02 2e-3 44 Contig9032_s_at Contig9032 - - 1e+1 At3g24513 - C.G. S.X.
0.02 2e-3 44 Contig16877_at Contig16877 - - 1e+0 At5g09960 unknown protein C.G. S.X.
0.02 2e-3 44 Contig9031_at Contig9031 - - 2e-4 At5g18270 ANAC087 C.G. S.X.
0.01 8e-3 42 Contig10753_at Contig10753 - - 9e-7 At4g36520 heat shock protein binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 3e-22 107 Arabidopsis thaliana At3g13510 820553 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB - - - C.G. S.X.
0.19 4e-13 77 Glycine max Gma.2172.2.S1_a_at BI426425 - - 1e-145 At1g55360 unknown protein C.G. S.X.
0.52 0 761 Oryza sativa OsAffx.13549.1.S1_at - - - 0 C.G. S.X.
0.20 3e-20 101 Populus trichocarpa PtpAffx.8523.1.S1_at CV239620 hypothetical protein - 9e-106 At1g55360 unknown protein C.G. S.X.
0.71 0 1039 Triticum aestivum Ta.5845.1.S1_x_at CK153266 - - 3e-13 At3g13510 unknown protein C.G. S.X.
0.09 7e-33 141 Vitis vinifera 1620804_at CD797824 hypothetical protein LOC100267227 - 3e-114 At1g55360 unknown protein C.G. S.X.
0.45 0 638 Zea mays Zm.18312.1.S1_at CK827776 hypothetical protein LOC100279515 - 7e-17 At3g13510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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