Gene omics information

Query gene ID Contig5260_s_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig5260_s_atContig5260--0At2g29630THIC (ThiaminC)S.X.H.G.
0.8394.0Contig5492_atContig5492--1e-7At3g44890RPL9 (RIBOSOMAL PROTEIN L9)S.X.H.G.
0.8092.5Contig7652_atContig7652--3e-3At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)S.X.H.G.
0.7187.1Contig20916_atContig20916--3e-1At5g66160JR700S.X.H.G.
0.6784.7Contig3018_atContig3018--2e+0At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)S.X.H.G.
0.4863.2Contig5241_atContig5241--8e-2At5g08790ATAF2S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.799.7GSM372957genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.199.6GSM31120528-4_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
16.099.6GSM31125128-4_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
15.899.6GSM372956genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.899.1GSM372965genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.799.0GSM31124528-4_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.499.0GSM311265kara_without_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.399.0GSM31120428-4_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.198.9GSM310867lina_without_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.798.9GSM311256hsp5_without_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0005604Contig5260_atContig5260--0At2g29630THIC (ThiaminC)C.G.S.X.
0.014e-240Contig24654_atContig24654--1e-1At1g28460AGL59 (AGAMOUS-LIKE 59)C.G.S.X.
0.017e-136Contig14879_atContig14879--2e+0At4g11870unknown proteinC.G.S.X.
0.017e-136Contig14769_atContig14769--8e-1At3g21830ASK8 (ARABIDOPSIS SKP1-LIKE 8)C.G.S.X.
0.017e-136HZ49L13r_atHZ49L13r--8e-1At2g20619-C.G.S.X.
0.017e-136Contig12856_atContig12856--9e-16At4g16600transferase, transferring glycosyl groups / transferase, transferring hexosyl groupsC.G.S.X.
0.013e+034Contig10750_atContig10750--1e-4At1g51600TIFY2AC.G.S.X.
0.013e+034Contig21006_atContig21006--6e-3Atmg00820-C.G.S.X.
0.013e+034Contig9244_atContig9244--3e-16At4g26750hydroxyproline-rich glycoprotein family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.430638Arabidopsis thalianaAt2g29630817513THIC (ThiaminC)Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.---C.G.S.X.
0.377e-102373Glycine maxGma.10771.3.S1_x_atCD394330--8e-152At2g29630THIC (ThiaminC)C.G.S.X.
0.7102082Oryza sativaOs.18490.3.S1_at---0C.G.S.X.
0.452e-173611Populus trichocarpaPtp.4820.1.S1_x_atBP933342hypothetical protein-0At2g29630THIC (ThiaminC)C.G.S.X.
0.8203132Triticum aestivumTa.3927.1.S1_atBT009095.1--3e-171At2g29630THIC (ThiaminC)C.G.S.X.
0.163e-36153Vitis vinifera1612311_atCA812173hypothetical protein LOC100250096-1e-47At2g29630THIC (ThiaminC)C.G.S.X.
0.6602024Zea maysZm.3219.3.S1_atCF056029thiamine biosynthesis protein thiC-2e-119At2g29630THIC (ThiaminC)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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