Gene omics information

Query gene ID Contig5234_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5774.9Contig5234_atContig5234--5e-11At1g09140SF2/ASF-like splicing modulator (SRP30)S.X.H.G.
0.7187.1Contig17958_atContig17958--2e+0At5g40370glutaredoxin, putativeS.X.H.G.
0.6784.7Contig13161_atContig13161--8e-1At5g51760AHG1 (ABA-hypersensitive germination 1)S.X.H.G.
0.6178.7Contig17213_atContig17213--1e+0At2g44110MLO15 (MILDEW RESISTANCE LOCUS O 15)S.X.H.G.
0.6178.7Contig9785_atContig9785--9e-4At4g25620hydroxyproline-rich glycoprotein family proteinS.X.H.G.
0.5774.9Contig10686_atContig10686--4e-8At4g24180-S.X.H.G.
0.5774.9Contig8882_atContig8882--4e-2At3g59680unknown proteinS.X.H.G.
0.5774.9Contig24555_atContig24555--1e+0At2g45070SEC61 BETAS.X.H.G.
0.5674.3Contig7590_atContig7590--7e-1At1g55580LAS (Lateral Suppressor)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.299.5GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
12.399.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
5.997.9GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.797.7GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
5.597.6GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.696.8GSM1611487% SWC rep3GSE6990Barley drought stress
4.596.7GSM282035Malting_day4_Morex_rep1GSE11200Expression data from malting barley seeds
4.496.6GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.496.6GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.496.6GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.7201114Contig5235_s_atContig5235--4e-7At1g09140SF2/ASF-like splicing modulator (SRP30)C.G.S.X.
0.263e-75282Contig16119_atContig16119--8e+0Atcg01060-C.G.S.X.
0.381e-46186Contig4304_atContig4304--3e-12At1g09140SF2/ASF-like splicing modulator (SRP30)C.G.S.X.
0.173e-35149Contig9536_atContig9536--6e-38At1g09140SF2/ASF-like splicing modulator (SRP30)C.G.S.X.
0.098e-548HU02A01u_s_atHU02A01u--4e+0At5g60330unknown proteinC.G.S.X.
0.098e-548HU02A01u_atHU02A01u--4e+0At5g60330unknown proteinC.G.S.X.
0.028e-238Contig15088_atContig15088--1e-1At4g35783RTFL6 (ROTUNDIFOLIA LIKE 6)C.G.S.X.
0.028e-238Contig5105_atContig5105--8e-9At3g26060ATPRX QC.G.S.X.
0.028e-238Contig25030_s_atContig25030--2e-30At3g47460ATSMC2C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.155e-1169Arabidopsis thalianaAt1g09140837433SF2/ASF-like splicing modulator (SRP30)Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.---C.G.S.X.
0.102e-861Glycine maxGma.2497.1.S1_atCD396374--7e-46At3g49430SRp34a (Ser/Arg-rich protein 34a)C.G.S.X.
0.493e-109397Oryza sativaOs03g0344100AK061903.1-Splicing factor SR1D1e-13At4g02430pre-mRNA splicing factor, putative / SR1 protein, putativeC.G.S.X.
0.207e-1789Populus trichocarpaPtpAffx.210886.1.S1_atpmrna21383hypothetical protein-5e-25At1g09140SF2/ASF-like splicing modulator (SRP30)C.G.S.X.
0.6901009Triticum aestivumTa.7066.1.S1_atBJ320259--2e-3At3g49430SRp34a (Ser/Arg-rich protein 34a)C.G.S.X.
0.203e-961Vitis vinifera1616840_atCF608637hypothetical protein LOC100255499-9e-15At1g09140SF2/ASF-like splicing modulator (SRP30)C.G.S.X.
0.514e-96351Zea maysZm.10359.1.S1_atT69043ASF/SF2-like pre-mRNA splicing factor SRP32-2e-19At1g09140SF2/ASF-like splicing modulator (SRP30)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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