Gene omics information

Query gene ID	Contig5187_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	56.4	Contig5187_at	Contig5187	-	-	3e-9	At5g08420	RNA binding	S.X.	H.G.	Please select
0.61	78.7	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	S.X.	H.G.	Please select
0.61	78.7	Contig17213_at	Contig17213	-	-	1e+0	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	S.X.	H.G.	Please select
0.53	69.7	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.50	66.9	Contig8882_at	Contig8882	-	-	4e-2	At3g59680	unknown protein	S.X.	H.G.	Please select
0.38	49.5	Contig12243_at	Contig12243	-	-	2e+0	At4g02370	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig5234_at	Contig5234	-	-	5e-11	At1g09140	SF2/ASF-like splicing modulator (SRP30)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
12.9	99.4	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.7	99.2	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
9.0	98.9	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.7	98.9	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.5	98.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
8.3	98.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.4	98.1	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2	98.0	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	749	Contig5188_s_at	Contig5188	-	-	5e-12	At5g08420	RNA binding	C.G.	S.X.	Please select
0.37	2e-169	595	HS16G02u_x_at	HS16G02u	-	-	7e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select
0.29	4e-81	301	Contig21528_at	Contig21528	-	-	7e-1	At5g47920	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	HVSMEh0085D01r2_at	HVSMEh0085D01r2	-	-	4e+0	At4g21920	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	Contig661_at	Contig661	-	-	4e-23	At2g39390	60S ribosomal protein L35 (RPL35B)	C.G.	S.X.	Please select
0.02	1e-1	38	Contig23329_at	Contig23329	-	-	2e-1	At1g12180	-	C.G.	S.X.	Please select
0.01	4e-1	36	Contig10100_at	Contig10100	-	-	6e-17	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig9086_at	Contig9086	-	-	5e-18	At3g48780	SPT1 (SERINE PALMITOYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig8821_at	Contig8821	-	-	4e-9	At5g45190	cyclin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	3e-9	63	Arabidopsis thaliana	At5g08420	830741	RNA binding	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;OMFAPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-24	115	Glycine max	GmaAffx.60021.1.S1_at	BE805276	-	-	4e+0	At4g40090	AGP3 (arabinogalactan-protein 3)	C.G.	S.X.	Please select
0.51	0	803	Oryza sativa	Os10g0452800	AK070158.1	-	Ribosomal RNA assembly protein mis3	8e-26	At5g08420	RNA binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-8	61	Populus trichocarpa	PtpAffx.60356.1.S1_at	AI163531	hypothetical protein	-	7e-33	At5g08420	RNA binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	1471	Triticum aestivum	Ta.1012.1.S1_at	CK151836	-	-	3e-6	At5g08420	RNA binding	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1618325_at	CD799971	hypothetical protein LOC100245609	-	9e-1	At1g12630	DNA binding / transcription activator/ transcription factor	C.G.	S.X.	Please select
0.48	0	670	Zea mays	Zm.12340.1.S1_at	AY104197.1	-	-	4e-9	At5g08420	RNA binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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