Gene omics information

Query gene ID	Contig5185_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5185_at	Contig5185	-	-	2e+0	At2g41480	electron carrier/ heme binding / peroxidase	S.X.	H.G.	Please select
0.91	98.1	Contig9378_at	Contig9378	-	-	6e-10	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	S.X.	H.G.	Please select
0.91	98.1	Contig7103_s_at	Contig7103	-	-	3e-16	At3g21430	-	S.X.	H.G.	Please select
0.91	98.1	Contig15036_at	Contig15036	-	-	1e-1	At3g07090	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig14821_at	Contig14821	-	-	4e-2	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.83	94.0	HU14M07u_s_at	HU14M07u	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.2	99.9	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
31.1	99.9	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
26.8	99.8	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
26.6	99.8	GSM261031	Dicktoo-control-rep2	GSE10329	Low temperature stress in cv. Dicktoo
20.4	99.7	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
19.3	99.7	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
12.3	99.4	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
12.0	99.3	GSM261051	Bonus Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.0	99.3	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
11.6	99.3	GSM71150	OWB-R unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	4e-176	617	HVSMEa0011I24r2_at	HVSMEa0011I24r2	-	-	4e+0	At5g48000	CYP708A2	C.G.	S.X.	Please select
0.02	3e-7	56	Contig6399_at	Contig6399	-	-	5e-9	At3g07810	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	C.G.	S.X.	Please select
0.03	1e-6	54	Contig7813_at	Contig7813	-	-	3e-12	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	C.G.	S.X.	Please select
0.03	5e-6	52	Contig22680_at	Contig22680	-	-	6e-1	At3g46870	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	1e-3	44	Contig25692_at	Contig25692	-	-	1e-4	At2g37650	scarecrow-like transcription factor 9 (SCL9)	C.G.	S.X.	Please select
0.02	1e-3	44	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	C.G.	S.X.	Please select
0.02	2e-2	40	Contig7450_at	Contig7450	-	-	7e+0	At3g21055	PSBTN (photosystem II subunit T)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig997_x_at	Contig997	-	-	2e-6	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig2803_at	Contig2803	-	-	8e-35	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g41480	818746	electron carrier/ heme binding / peroxidase	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	GmaAffx.31403.1.S1_at	BF424943	-	-	2e-1	At4g36460	unknown protein	C.G.	S.X.	Please select
0.37	1e-52	208	Oryza sativa	Os09g0538000	AK059757.1	-	RNase S-like protein	6e-1	At1g52140	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e-2	40	Populus trichocarpa	PtpAffx.2753.1.S1_at	CV248422	hypothetical protein	-	4e-32	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1235	Triticum aestivum	Ta.26907.1.S1_at	CK215294	-	-	2e+0	At2g42220	rhodanese-like domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1609734_at	CF404902	-	-	2e+0	At3g27030	unknown protein	C.G.	S.X.	Please select
0.17	2e-20	99	Zea mays	Zm.316.1.A1_at	CO519149	knotted1 induced1	-	1e-1	At5g35220	EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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