Gene omics information

Query gene ID	Contig5182_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5182_at	Contig5182	-	-	9e-34	At4g12590	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig7652_at	Contig7652	-	-	3e-3	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	S.X.	H.G.	Please select
0.67	84.7	Contig3018_at	Contig3018	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	S.X.	H.G.	Please select
0.63	80.3	Contig3992_at	Contig3992	-	-	1e-40	At1g14670	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.60	77.3	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	S.X.	H.G.	Please select
0.60	77.3	Contig5260_s_at	Contig5260	-	-	0	At2g29630	THIC (ThiaminC)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	95.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.2	94.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
2.7	92.7	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-3	42	Contig7139_at	Contig7139	-	-	4e-1	At1g28335	LCR31 (Low-molecular-weight cysteine-rich 31)	C.G.	S.X.	Please select
0.03	4e-3	42	HVSMEf0008B14r2_s_at	HVSMEf0008B14r2	-	-	2e-1	At1g28335	LCR31 (Low-molecular-weight cysteine-rich 31)	C.G.	S.X.	Please select
0.01	7e-2	38	Contig2736_s_at	Contig2736	-	-	3e-4	At1g02850	BGLU11 (BETA GLUCOSIDASE 11)	C.G.	S.X.	Please select
0.02	7e-2	38	Contig7895_at	Contig7895	-	-	2e+0	At4g08406	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig23750_at	Contig23750	-	-	2e+0	At3g53860	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig5883_s_at	Contig5883	-	-	1e+0	At1g68280	thioesterase-related	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9386_at	Contig9386	-	-	8e-17	At5g05980	ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14660_at	Contig14660	-	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.01	1e+0	34	Contig13717_at	Contig13717	-	-	8e-22	At2g37590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	9e-34	145	Arabidopsis thaliana	At4g12590	826872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, endoplasmic reticulum;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	1e-36	155	Glycine max	Gma.8031.1.S1_at	BE823105	-	-	4e-76	At4g12590	unknown protein	C.G.	S.X.	Please select
0.58	0	817	Oryza sativa	Os09g0497400	AK068677.1	-	Eukaryotic protein of unknown function DUF850family protein	5e-32	At4g12590	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	2e-50	200	Populus trichocarpa	PtpAffx.6864.1.S1_at	CN550052	hypothetical protein	-	2e-96	At4g12590	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	1572	Triticum aestivum	Ta.6467.1.S1_a_at	CK194906	-	-	1e-35	At4g12590	unknown protein	C.G.	S.X.	Please select
0.32	1e-20	99	Vitis vinifera	1613866_s_at	CF510932	hypothetical protein LOC100245100	-	2e-68	At4g12590	unknown protein	C.G.	S.X.	Please select
0.54	0	769	Zea mays	Zm.7045.1.A1_at	AY108667.1	protein pob	-	2e-37	At4g12590	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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