Gene omics information

Query gene ID	Contig5161_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.67	84.7	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	S.X.	H.G.	Please select
0.61	78.7	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select
0.60	77.3	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	S.X.	H.G.	Please select
0.57	74.9	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	97.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.8	95.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	8e-128	454	Contig5158_at	Contig5158	-	-	2e+0	At4g17510	UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3)	C.G.	S.X.	Please select
0.07	2e-20	97	Contig5159_at	Contig5159	-	-	1e-23	At5g17440	LUC7 N_terminus domain-containing protein	C.G.	S.X.	Please select
0.04	3e-1	34	Contig24846_at	Contig24846	-	-	3e-1	At4g11750	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig15605_at	Contig15605	-	-	3e-8	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Contig24087_at	Contig24087	-	-	3e-1	At5g50300	xanthine/uracil/vitamin C permease family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Contig8304_s_at	Contig8304	-	-	1e+0	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Contig8304_at	Contig8304	-	-	1e+0	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	4e+0	30	Contig18496_at	Contig18496	-	-	4e-2	At2g07689	NADH-ubiquinone oxidoreductase, putative	C.G.	S.X.	Please select
0.04	4e+0	30	HW07N21u_at	HW07N21u	-	-	7e-2	At1g38950	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-3	40	Arabidopsis thaliana	At1g54860	841925	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-3	42	Glycine max	Gma.17924.2.A1_at	AW234137	-	-	7e-26	At3g03340	UNE6 (unfertilized embryo sac 6)	C.G.	S.X.	Please select
0.02	7e-5	48	Oryza sativa	Os03g0843500	AK067985.1	-	Sarcoplasmic reticulum protein (With alternativesplicing)	3e-23	At5g17440	LUC7 N_terminus domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-1	34	Populus trichocarpa	PtpAffx.16298.1.A1_at	DN491541	-	-	8e-1	At5g42380	CML37 (CALMODULIN LIKE 37)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-10	65	Triticum aestivum	Ta.3085.3.A1_a_at	CD917279	pre-mRNA processing factor	-	5e+0	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.04	7e-1	32	Vitis vinifera	1618984_at	CF206626.1	hypothetical protein LOC100266739	-	9e-8	At1g77350	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Zea mays	Zm.1362.1.S1_at	AW927447	-	-	3e+0	At3g49645	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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