CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5146_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig5146_at Contig5146 - - 4e-21 At1g76690 OPR2 S.X. H.G.
0.61 78.7 Contig16253_at Contig16253 - - 7e+0 At5g48515 - S.X. H.G.
0.53 69.7 Contig3836_at Contig3836 - - 9e-3 At1g27540 F-box family protein S.X. H.G.
0.29 35.5 Contig16249_at Contig16249 - - 6e-4 At3g61320 unknown protein S.X. H.G.
0.22 24.2 Contig10972_at Contig10972 - - 1e-5 At1g32500 ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) S.X. H.G.
0.19 19.6 rbah44m04_s_at rbah44m04 - - 2e+0 At1g32560 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.4 99.9 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
33.5 99.9 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
16.0 99.6 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
14.3 99.5 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.7 99.5 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
9.2 99.0 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.8 98.9 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
8.0 98.7 GSM372990 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.5 98.6 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.3 98.5 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 38 Contig1175_s_at Contig1175 - - 2e-21 At3g07110 60S ribosomal protein L13A (RPL13aA) C.G. S.X.
0.02 9e-2 38 Contig1175_at Contig1175 - - 2e-21 At3g07110 60S ribosomal protein L13A (RPL13aA) C.G. S.X.
0.01 9e-2 38 Contig1170_at Contig1170 - - 3e-21 At3g07110 60S ribosomal protein L13A (RPL13aA) C.G. S.X.
0.01 3e-1 36 Contig8108_at Contig8108 - - 3e-21 At4g26600 nucleolar protein, putative C.G. S.X.
0.01 3e-1 36 Contig11532_at Contig11532 - - 1e-22 At2g42960 protein kinase family protein C.G. S.X.
0.02 3e-1 36 Contig25703_at Contig25703 - - 5e+0 At5g39110 germin-like protein, putative C.G. S.X.
0.01 3e-1 36 Contig8503_at Contig8503 - - 4e-3 At4g18140 phosphatase C.G. S.X.
0.02 3e-1 36 Contig8122_at Contig8122 - - 4e-2 At1g66950 PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) C.G. S.X.
0.02 3e-1 36 Contig6194_s_at Contig6194 - - 2e+0 At1g76680 OPR1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 4e-21 103 Arabidopsis thaliana At1g76690 844002 OPR2 Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. - - - C.G. S.X.
0.15 2e-14 81 Glycine max GmaAffx.67883.1.S1_at BG046605 - - 1e-15 At1g76690 OPR2 C.G. S.X.
0.55 0 1209 Oryza sativa Os.15627.1.A1_at - - - 0 C.G. S.X.
0.27 8e-20 99 Populus trichocarpa PtpAffx.26497.1.S1_at CK105060 - - 3e-52 At1g76690 OPR2 C.G. S.X.
0.89 0 2048 Triticum aestivum Ta.5509.1.S1_at CA669976 - - 1e-17 At1g76690 OPR2 C.G. S.X.
0.22 6e-14 77 Vitis vinifera 1607601_at CF209956 hypothetical protein LOC100244746 - 2e-15 At1g09400 12-oxophytodienoate reductase, putative C.G. S.X.
0.63 4e-179 626 Zea mays Zm.7548.1.A1_at BM078903 12-oxo-phytodienoic acid reductase5 - 5e-11 At1g76690 OPR2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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