Gene omics information

Query gene ID Contig5117_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig5117_atContig5117--8e-2At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinS.X.H.G.
0.7790.8Contig11464_atContig11464--6e-20At1g55740AtSIP1 (Arabidopsis thaliana seed imbibition 1)S.X.H.G.
0.6784.7Contig4175_atContig4175--1e-19At3g07100protein transport protein Sec24, putativeS.X.H.G.
0.6077.3Contig6995_atContig6995--2e-8At5g57270unknown proteinS.X.H.G.
0.5572.0Contig725_s_atContig725--1e-15At1g21750ATPDIL1-1 (PDI-LIKE 1-1)S.X.H.G.
0.5066.9Contig12398_atContig12398--2e-1At2g31240tetratricopeptide repeat (TPR)-containing proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.198.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.098.4GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.798.3GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.597.6GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.997.1GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.897.0GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.796.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.596.7GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.496.6GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.196.2GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.306e-103373Contig5116_atContig5116--6e-15At2g18740small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeC.G.S.X.
0.104e-1167HY05C09u_x_atHY05C09u--2e-1At1g58420-C.G.S.X.
0.026e-134Contig4904_atContig4904--5e-4At2g34070unknown proteinC.G.S.X.
0.033e+032rbags16l24_atrbags16l24--5e+0At5g10830embryo-abundant protein-relatedC.G.S.X.
0.023e+032Contig3603_atContig3603--2e-15At3g25400-C.G.S.X.
0.043e+032rbags23o05_x_atrbags23o05--1e-1At3g61962unknown proteinC.G.S.X.
0.043e+032rbags23o05_atrbags23o05--1e-1At3g61962unknown proteinC.G.S.X.
0.033e+032HVSMEm0015P16r2_atHVSMEm0015P16r2--1e+1At5g40700unknown proteinC.G.S.X.
0.013e+032Contig8609_atContig8609--7e-2At5g20960AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-238Arabidopsis thalianaAt5g60500836171undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinF:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAP---C.G.S.X.
0.032e+034Glycine maxGma.14240.1.S1_atCD418392--3e-1At3g27410unknown proteinC.G.S.X.
0.206e-35149Oryza sativaOsAffx.8086.1.S1_x_at---0C.G.S.X.
0.037e+032Populus trichocarpaPtpAffx.219383.1.S1_atpmrna35296--5e+0At1g54215proline-rich family proteinC.G.S.X.
0.385e-71268Triticum aestivumTaAffx.50528.1.S1_atCA739099--6e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeC.G.S.X.
0.034e-134Vitis vinifera1610341_atCB347319hypothetical protein LOC100247127-6e-9At2g18130PAP11 (PURPLE ACID PHOSPHATASE 11)C.G.S.X.
0.122e-1995Zea maysZm.4403.1.S1_atAY111276.1hypothetical protein LOC100279045-5e+0At5g16400ATF2C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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