CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5032_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig5032_at Contig5032 - - 4e-1 At4g38210 ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20) S.X. H.G.
0.73 88.7 Contig2425_s_at Contig2425 - - 2e+0 At5g06900 CYP93D1 S.X. H.G.
0.71 87.1 Contig9031_at Contig9031 - - 2e-4 At5g18270 ANAC087 S.X. H.G.
0.67 84.7 Contig25583_at Contig25583 - - 2e+0 At4g33520 PAA1 (P-TYPE ATP-ASE 1) S.X. H.G.
0.61 78.7 HVSMEl0003A05r2_at HVSMEl0003A05r2 - - 1e+0 At3g59320 integral membrane protein, putative S.X. H.G.
0.59 75.8 Contig8372_at Contig8372 - - 1e+0 At3g27960 kinesin light chain-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.3 99.6 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.1 98.9 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.1 98.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.7 98.6 GSM238439 Embryo 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.7 98.3 GSM238437 Embryo 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.5 97.6 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.4 97.5 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM282021 Malting_day4_Legacy_rep 2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 0 781 HU09E20u_s_at HU09E20u - - 3e+0 At3g55820 - C.G. S.X.
0.02 5e-2 38 Contig10787_at Contig10787 - - 5e-5 At4g27880 seven in absentia (SINA) family protein C.G. S.X.
0.02 5e-2 38 Contig13826_at Contig13826 - - 2e-1 At4g02730 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 2e-1 36 Contig4104_at Contig4104 - - 1e-19 At1g73230 nascent polypeptide-associated complex (NAC) domain-containing protein C.G. S.X.
0.02 2e-1 36 Contig14861_at Contig14861 - - 5e-1 At2g45530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-1 36 Contig17676_at Contig17676 - - 1e+0 At4g19810 glycosyl hydrolase family 18 protein C.G. S.X.
0.02 2e-1 36 Contig13930_at Contig13930 - - 4e-1 At2g32820 - C.G. S.X.
0.02 2e-1 36 Contig4105_s_at Contig4105 - - 8e-33 At1g73230 nascent polypeptide-associated complex (NAC) domain-containing protein C.G. S.X.
0.02 8e-1 34 HVSMEn0019F17r2_at HVSMEn0019F17r2 - - 3e-1 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Arabidopsis thaliana At4g38210 829977 ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20) expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. - - - C.G. S.X.
0.04 2e-6 54 Glycine max Gma.13924.1.S1_at AW100408 - - 8e-1 At5g19900 PRLI-interacting factor, putative C.G. S.X.
0.32 2e-47 190 Oryza sativa Os.8974.1.S1_at - - - 0 C.G. S.X.
0.06 2e+0 34 Populus trichocarpa Ptp.4380.1.S1_s_at CV247627 hypothetical protein - 1e-13 At3g13882 structural constituent of ribosome C.G. S.X.
0.79 0 757 Triticum aestivum Ta.3223.1.S1_at CA663326 - - 6e+0 At5g63500 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1618693_at CB348122 hypothetical protein LOC100263832 - 9e-32 At5g56500 ATP binding / protein binding C.G. S.X.
0.29 1e-42 173 Zea mays Zm.6121.1.S1_at CD439726 - - 4e-1 At5g54540 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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