Gene omics information

Query gene ID	Contig500_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig500_at	Contig500	-	-	4e-19	At5g59690	histone H4	S.X.	H.G.	Please select
0.77	90.8	Contig11340_at	Contig11340	-	-	1e-4	At4g00940	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.71	87.1	Contig5196_at	Contig5196	-	-	2e-24	At4g02120	CTP synthase, putative / UTP--ammonia ligase, putative	S.X.	H.G.	Please select
0.60	77.3	HY07K02u_at	HY07K02u	-	-	3e+0	At1g03730	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig3654_s_at	Contig3654	-	-	2e-36	At3g20050	ATTCP-1	S.X.	H.G.	Please select
0.50	66.9	Contig9287_at	Contig9287	-	-	3e-3	At3g47890	ubiquitin thiolesterase/ zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.2	99.9	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
34.9	99.9	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
34.3	99.9	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
30.6	99.9	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study
24.2	99.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
23.2	99.8	GSM68896	8 h control replicate 2	GSE3097	Barley1 salinity stress study
20.3	99.7	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
19.0	99.7	GSM68894	3 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
18.4	99.7	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
16.3	99.6	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	801	Contig159_at	Contig159	-	-	8e-17	At5g59690	histone H4	C.G.	S.X.	Please select
0.46	4e-147	519	EBro03_SQ005_P18_x_at	EBro03_SQ005_P18	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.46	4e-147	519	EBro03_SQ005_P18_at	EBro03_SQ005_P18	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.41	4e-147	519	Contig576_x_at	Contig576	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.41	4e-147	519	Contig576_s_at	Contig576	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.51	6e-146	515	Contig197_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.51	6e-146	515	Contig197_s_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.48	9e-145	511	Contig659_at	Contig659	-	-	2e-26	At5g59690	histone H4	C.G.	S.X.	Please select
0.48	1e-143	508	Contig131_at	Contig131	-	-	1e-21	At5g59690	histone H4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	4e-19	95	Arabidopsis thaliana	At5g59690	836090	histone H4	F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.54	9e-98	357	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.54	1e-140	500	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	2e-6	54	Populus trichocarpa	PtpAffx.4633.2.S1_at	CA823688	-	-	9e-47	At1g07820	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	1e-170	599	Triticum aestivum	TaAffx.132315.2.S1_x_at	BE493709	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.43	3e-23	107	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	1e-134	478	Zea mays	Zm.6721.9.A1_a_at	BM380489	Histone H4	-	6e-18	At5g59970	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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