Gene omics information

Query gene ID	Contig5001_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	68.3	Contig5001_s_at	Contig5001	-	-	3e-1	At5g09440	EXL4 (EXORDIUM LIKE 4)	S.X.	H.G.	Please select
0.93	98.7	Contig12402_at	Contig12402	-	-	3e+0	At3g05490	RALFL22 (ralf-like 22)	S.X.	H.G.	Please select
0.93	98.7	HVSMEg0001N20r2_at	HVSMEg0001N20r2	-	-	3e+0	At4g03050	AOP3	S.X.	H.G.	Please select
0.86	94.8	Contig2041_x_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	S.X.	H.G.	Please select
0.71	87.1	Contig6006_s_at	Contig6006	-	-	3e+0	At1g60830	U2 snRNP auxiliary factor large subunit, putative	S.X.	H.G.	Please select
0.70	86.0	Contig2041_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	S.X.	H.G.	Please select
0.67	84.7	Contig8898_at	Contig8898	-	-	2e-29	At2g25570	binding	S.X.	H.G.	Please select
0.67	84.7	Contig6005_x_at	Contig6005	-	-	3e-1	At1g20130	hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.0	99.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
21.5	99.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
21.3	99.7	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
17.7	99.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.3	99.6	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.7	99.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
12.3	99.4	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.0	99.3	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
11.9	99.3	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
11.4	99.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	8e-34	143	Contig5002_at	Contig5002	-	-	8e-3	At1g22680	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig19407_at	Contig19407	-	-	5e-1	At1g32580	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.02	1e-1	36	Contig13130_at	Contig13130	-	-	6e-1	At4g16380	metal ion binding	C.G.	S.X.	Please select
0.02	1e-1	36	Contig5238_at	Contig5238	-	-	2e-16	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Contig7203_at	Contig7203	-	-	2e-7	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig7802_at	Contig7802	-	-	4e-9	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please select
0.04	5e-1	34	Contig18032_at	Contig18032	-	-	1e+0	At4g38090	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig19225_at	Contig19225	-	-	4e+0	At2g07820	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig12973_at	Contig12973	-	-	2e+0	At1g60000	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At5g09440	830803	EXL4 (EXORDIUM LIKE 4)	F:molecular_function unknown;P:biological_process unknown;C:membrane;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.C24000081_at	PsAffx.C24000081	-	-	5e-1	At4g29810	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	C.G.	S.X.	Please select
0.23	7e-19	95	Oryza sativa	Os11g0113300	BX898462	-	Conserved hypothetical protein	5e-1	At4g20470	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	4e-1	36	Populus trichocarpa	Ptp.6340.1.S1_at	BU888207	hypothetical protein	-	2e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	8e-159	559	Triticum aestivum	Ta.7288.1.S1_at	BJ318237	-	-	3e-1	At5g09440	EXL4 (EXORDIUM LIKE 4)	C.G.	S.X.	Please select
0.09	9e-5	46	Vitis vinifera	1619815_at	CB973946	hypothetical protein LOC100267277	-	4e-7	At5g58375	unknown protein	C.G.	S.X.	Please select
0.36	2e-21	101	Zea mays	Zm.1615.1.S1_at	AY106014.1	hypothetical protein LOC100279676	-	1e+0	At5g23405	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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