Gene omics information

Query gene ID	Contig4976_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig4976_at	Contig4976	-	-	4e+0	At5g12010	unknown protein	S.X.	H.G.	Please select
0.57	74.9	Contig10245_at	Contig10245	-	-	2e+0	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	S.X.	H.G.	Please select
0.53	69.7	Contig12158_at	Contig12158	-	-	1e-1	At4g08230	glycine-rich protein	S.X.	H.G.	Please select
0.53	69.7	Contig9728_at	Contig9728	-	-	4e-1	At1g58100	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.38	49.5	EBpi07_SQ002_O14_at	EBpi07_SQ002_O14	-	-	3e+0	At2g26520	unknown protein	S.X.	H.G.	Please select
0.34	43.6	Contig2737_at	Contig2737	-	-	9e-1	At4g22100	BGLU3 (BETA GLUCOSIDASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.4	99.8	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.3	99.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.1	99.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.6	99.5	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.8	99.1	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
8.7	98.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1	98.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.7	98.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.7	98.3	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6	98.2	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-3	42	Contig438_at	Contig438	-	-	2e+0	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig16254_at	Contig16254	-	-	4e-2	At4g22730	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.01	1e-1	38	Contig9872_at	Contig9872	-	-	8e-7	At2g44520	COX10 (cytochrome c oxidase 10)	C.G.	S.X.	Please select
0.02	1e-1	38	Contig16048_at	Contig16048	-	-	8e-1	At1g24880	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	C.G.	S.X.	Please select
0.01	1e-1	38	Contig12118_at	Contig12118	-	-	3e-1	At1g34419	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig3952_at	Contig3952	-	-	7e-1	At1g25400	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	Contig5256_at	Contig5256	-	-	3e-11	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig5066_at	Contig5066	-	-	7e-1	At3g42310	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig4316_at	Contig4316	-	-	8e-17	At5g14520	pescadillo-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	34	Arabidopsis thaliana	At5g12010	831074	unknown protein	F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-12	75	Glycine max	GmaAffx.85640.1.S1_at	AW703774	-	-	1e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.63	0	773	Oryza sativa	Os01g0582600	9629.m03821	-	Conserved hypothetical protein	7e-5	At4g29780	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-9	65	Populus trichocarpa	PtpAffx.29056.1.S1_at	DN500805	hypothetical protein	-	6e-6	At5g12010	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.86	0	1929	Triticum aestivum	Ta.10520.1.S1_at	AL828817	-	-	2e-2	At4g29780	unknown protein	C.G.	S.X.	Please select
0.07	8e-5	48	Vitis vinifera	1610356_at	CB980194	hypothetical protein LOC100262760	-	2e-3	At5g12010	unknown protein	C.G.	S.X.	Please select
0.30	2e-83	309	Zea mays	Zm.11770.1.A1_at	BM380607	hypothetical protein LOC100191551	-	9e-5	At5g12010	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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