Gene omics information

Query gene ID	Contig4931_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	Contig4931_at	Contig4931	-	-	1e-22	At1g75850	VPS35B (VPS35 HOMOLOG B)	S.X.	H.G.	Please select
0.71	87.1	HY07D14u_s_at	HY07D14u	-	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	S.X.	H.G.	Please select
0.50	66.9	HVSMEf0003F23r2_at	HVSMEf0003F23r2	-	-	9e-1	At5g09570	-	S.X.	H.G.	Please select
0.40	53.1	Contig9481_at	Contig9481	-	-	2e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	S.X.	H.G.	Please select
0.32	40.3	Contig12297_at	Contig12297	-	-	1e+0	At3g13190	myosin heavy chain-related	S.X.	H.G.	Please select
0.23	26.1	Contig4956_at	Contig4956	-	-	2e+0	At5g01840	OFP1 (OVATE FAMILY PROTEIN 1)	S.X.	H.G.	Please select
0.21	22.6	Contig19410_at	Contig19410	-	-	1e+1	At5g49420	MADS-box protein (AGL84)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.5	95.1	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-2	42	Contig1615_s_at	Contig1615	-	-	2e-103	At5g42020	BIP2	C.G.	S.X.	Please select
0.01	1e-2	42	Contig1615_at	Contig1615	-	-	2e-103	At5g42020	BIP2	C.G.	S.X.	Please select
0.01	5e-2	40	Contig4567_at	Contig4567	-	-	2e-10	At3g26710	CCB1 (COFACTOR ASSEMBLY OF COMPLEX C)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig9872_at	Contig9872	-	-	8e-7	At2g44520	COX10 (cytochrome c oxidase 10)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig9658_at	Contig9658	CesA4 protein	-	3e-10	At5g44030	CESA4 (CELLULOSE SYNTHASE A4)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig24779_at	Contig24779	-	-	5e+0	At1g04070	TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig16643_at	Contig16643	-	-	2e-9	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig13863_at	Contig13863	-	-	9e-1	At1g04778	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	38	Contig10346_at	Contig10346	-	-	8e-1	At2g22080	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-22	109	Arabidopsis thaliana	At1g75850	843918	VPS35B (VPS35 HOMOLOG B)	F:unknown;P:intracellular protein transport, retrograde transport, endosome to Golgi;C:cellular_component unknown;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	5e-35	151	Glycine max	GmaAffx.57700.1.S1_at	AW781821	-	-	8e-20	At1g75850	VPS35B (VPS35 HOMOLOG B)	C.G.	S.X.	Please select
0.75	0	2886	Oryza sativa	Os03g0801600	AK069591.1	-	Vacuolar protein sorting-associated protein 35family protein	2e-37	At1g75850	VPS35B (VPS35 HOMOLOG B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	1e-47	192	Populus trichocarpa	PtpAffx.201594.1.S1_at	pmrna3138	hypothetical protein	-	2e-94	At1g75850	VPS35B (VPS35 HOMOLOG B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.93	0	5004	Triticum aestivum	Ta.10271.1.S1_at	CK209140	-	-	8e-21	At1g75850	VPS35B (VPS35 HOMOLOG B)	C.G.	S.X.	Please select
0.01	1e-1	38	Vitis vinifera	1619519_at	CB971445	hypothetical protein LOC100250171	-	1e+0	At4g37200	HCF164	C.G.	S.X.	Please select
0.56	0	1687	Zea mays	Zm.5855.1.A1_at	AY104601.1	-	-	4e-31	At1g75850	VPS35B (VPS35 HOMOLOG B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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