Gene omics information

Query gene ID	Contig4910_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig4910_at	Contig4910	-	-	3e+0	At5g09280	pectate lyase family protein	S.X.	H.G.	Please select
0.60	77.3	Contig7087_at	Contig7087	-	-	8e-1	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.60	77.3	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.50	66.9	EBem09_SQ005_B09_s_at	EBem09_SQ005_B09	-	-	3e+0	At4g13500	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.19	19.6	Contig460_s_at	Contig460	sucrose synthase	-	6e-12	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.4	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
11.0	99.2	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
10.9	99.2	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
9.8	99.1	GSM160815	drought control rep3	GSE6990	Barley drought stress
9.7	99.0	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
9.6	99.0	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
9.5	99.0	GSM261031	Dicktoo-control-rep2	GSE10329	Low temperature stress in cv. Dicktoo
8.8	98.9	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
8.7	98.9	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
8.4	98.8	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	2133	Contig4911_at	Contig4911	-	-	7e-1	At5g09280	pectate lyase family protein	C.G.	S.X.	Please select
0.42	8e-73	274	Contig5038_at	Contig5038	-	-	3e+0	At1g62900	O-methyltransferase, putative	C.G.	S.X.	Please select
0.29	1e-34	147	Contig5613_at	Contig5613	-	-	5e+0	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.22	7e-18	91	Contig3551_at	Contig3551	-	-	2e+0	At4g28440	DNA-binding protein-related	C.G.	S.X.	Please select
0.17	3e-14	79	Contig6345_at	Contig6345	-	-	7e+0	At4g07825	unknown protein	C.G.	S.X.	Please select
0.23	3e-14	79	Contig6344_s_at	Contig6344	-	-	3e+0	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	C.G.	S.X.	Please select
0.23	3e-14	79	Contig6344_at	Contig6344	-	-	3e+0	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	C.G.	S.X.	Please select
0.10	2e-12	73	HVSMEf0005J23f_s_at	HVSMEf0005J23f	-	-	3e+0	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	C.G.	S.X.	Please select
0.26	2e-9	63	Contig3552_at	Contig3552	-	-	7e-1	At4g29273	LCR23 (Low-molecular-weight cysteine-rich 23)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e+0	34	Arabidopsis thaliana	At5g09280	830787	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:cellular_component unknown;PBFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	34	Glycine max	Gma.8116.1.A1_at	BU548351	-	-	2e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	C.G.	S.X.	Please select
0.17	2e-12	75	Oryza sativa	Os11g0235500	9639.m01223	-	Herbicide safener binding protein	2e+0	At1g64840	F-box family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Populus trichocarpa	PtpAffx.214256.1.S1_at	pmrna27739	f-box family protein	-	1e-1	At5g24560	AtPP2-B12 (Phloem protein 2-B12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	948	Triticum aestivum	TaAffx.97211.1.S1_at	AJ614654	-	-	1e+0	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1616721_at	CF608439	hypothetical protein LOC100260478	-	1e+0	At5g08150	unknown protein	C.G.	S.X.	Please select
0.10	2e-5	50	Zea mays	Zm.5715.1.A1_at	CF623363	O-methyltransferase ZRP4	-	3e+0	At5g25752	RBL11 (RHOMBOID-LIKE PROTEIN 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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