Gene omics information

Query gene ID	Contig4878_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig4878_at	Contig4878	-	-	8e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please select
0.53	69.7	Contig11538_at	Contig11538	-	-	4e-8	At4g37120	SMP2	S.X.	H.G.	Please select
0.47	62.2	Contig24772_at	Contig24772	-	-	1e-4	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select
0.40	53.1	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.38	49.5	Contig8059_at	Contig8059	-	-	8e-18	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	S.X.	H.G.	Please select
0.33	42.6	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.33	42.6	Contig15411_at	Contig15411	-	-	2e-4	At5g49890	CLC-C (CHLORIDE CHANNEL C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	98.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.6	98.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.5	98.6	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.9	98.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	3e-23	109	Contig3102_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.20	3e-23	109	Contig3102_s_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.01	8e-2	38	Contig12402_at	Contig12402	-	-	3e+0	At3g05490	RALFL22 (ralf-like 22)	C.G.	S.X.	Please select
0.02	8e-2	38	Contig19651_at	Contig19651	-	-	5e+0	At3g02480	ABA-responsive protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	Contig16668_at	Contig16668	-	-	5e-1	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig13421_at	Contig13421	-	-	3e-28	At2g31190	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig2161_s_at	Contig2161	-	-	2e-46	At1g75630	AVA-P4	C.G.	S.X.	Please select
0.02	1e+0	34	Contig1669_at	Contig1669	-	-	5e-13	At1g48830	40S ribosomal protein S7 (RPS7A)	C.G.	S.X.	Please select
0.01	5e+0	32	AJ132968.1_s_at	AJ132968.1	-	-	2e+0	At5g57980	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	8e-19	95	Arabidopsis thaliana	At1g47260	841129	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	1e-6	56	Glycine max	Gma.16388.1.S1_at	CD403252	-	-	1e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.61	0	670	Oryza sativa	Os12g0169700	AK103904.1	-	Ferripyochelin-binding protein-like	8e-16	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	5e-30	133	Populus trichocarpa	Ptp.2146.1.S1_at	CK088192	hypothetical protein	-	5e-109	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1717	Triticum aestivum	Ta.4019.1.S1_at	BJ250474	-	-	5e-14	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.15	1e-24	113	Vitis vinifera	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.60	0	847	Zea mays	Zm.5237.1.A1_at	AY107290.1	hypothetical protein LOC100273890	-	2e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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