CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig484_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.7 Contig484_x_at Contig484 - - 1e-38 At1g09200 histone H3 S.X. H.G.
0.57 74.9 Contig484_s_at Contig484 - - 1e-38 At1g09200 histone H3 S.X. H.G.
0.18 18.2 Contig10108_at Contig10108 - - 2e-1 At3g22830 AT-HSFA6B S.X. H.G.
0.15 14.1 Contig15357_at Contig15357 - - 3e-1 At1g24440 protein binding / zinc ion binding S.X. H.G.
0.14 12.9 Contig4789_at Contig4789 - - 1e-14 At5g42790 PAF1 S.X. H.G.
0.07 5.8 Contig17421_at Contig17421 - - 4e+0 At1g45248 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.9 100.0 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
44.9 99.9 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
42.2 99.9 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
33.6 99.9 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
30.8 99.9 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
28.5 99.8 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
26.3 99.8 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
22.2 99.8 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
19.6 99.7 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
17.7 99.7 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1723 Contig484_s_at Contig484 - - 1e-38 At1g09200 histone H3 C.G. S.X.
0.26 0 981 Contig711_s_at Contig711 - - 3e-2 At5g53590 auxin-responsive family protein C.G. S.X.
0.39 0 704 Contig320_at Contig320 - - 3e+0 At5g35520 MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE) C.G. S.X.
0.38 1e-157 555 Contig141_at Contig141 - - 9e-45 At1g09200 histone H3 C.G. S.X.
0.36 2e-155 547 Contig196_s_at Contig196 - - 1e-44 At1g09200 histone H3 C.G. S.X.
0.33 3e-130 464 Contig349_s_at Contig349 - - 6e-52 At1g09200 histone H3 C.G. S.X.
0.33 4e-129 460 Contig338_s_at Contig338 - - 2e-39 At1g09200 histone H3 C.G. S.X.
0.33 4e-129 460 Contig338_at Contig338 - - 2e-39 At1g09200 histone H3 C.G. S.X.
0.33 2e-128 458 Contig657_s_at Contig657 - - 1e-49 At1g09200 histone H3 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-38 161 Arabidopsis thaliana At1g09200 837440 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO - - - C.G. S.X.
0.56 2e-133 476 Glycine max GmaAffx.1301.92.S1_s_at BM527505 - - 3e+0 At2g38610 KH domain-containing protein C.G. S.X.
0.42 0 831 Oryza sativa Os03g0288400 AK063268.1 - Conserved hypothetical protein 3e+0 At1g77470 replication factor C 36 kDA, putative C.G. S.X.
0.25 0 672 Populus trichocarpa PtpAffx.250003.1.S1_s_at 19919559 - - 8e-15 At2g01021 unknown protein C.G. S.X.
0.54 7e-139 494 Triticum aestivum TaAffx.128418.141.S1_at CA678595 - - 1e+0 At5g02160 unknown protein C.G. S.X.
0.30 1e-66 252 Vitis vinifera 1617502_s_at CD797339 - - 4e+0 At5g67490 unknown protein C.G. S.X.
0.30 3e-111 400 Zea mays Zm.14513.1.A1_at CA828306 Histone H3.2 - 6e-37 At1g09200 histone H3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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