CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4814_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig4814_at Contig4814 - - 1e+0 At3g60530 zinc finger (GATA type) family protein S.X. H.G.
0.27 32.1 Contig11148_at Contig11148 - - 1e+0 At3g05800 transcription factor S.X. H.G.
0.24 27.2 Contig9504_at Contig9504 - - 2e-3 At2g26740 ATSEH (Arabidopsis thaliana soluble epoxide hydrolase) S.X. H.G.
0.23 26.1 Contig16036_at Contig16036 - - 1e+0 At2g36820 - S.X. H.G.
0.18 18.2 Contig11605_at Contig11605 - - 4e-8 At5g47310 unknown protein S.X. H.G.
0.15 14.1 HT09O01u_at HT09O01u - - 3e+0 At1g21050 unknown protein S.X. H.G.
0.14 12.9 Contig16107_at Contig16107 - - 2e+0 At3g09980 unknown protein S.X. H.G.
0.14 12.9 Contig9134_at Contig9134 - - 4e-22 At4g32600 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.10 8.4 Contig21290_at Contig21290 - - 2e+0 At5g01910 unknown protein S.X. H.G.
0.09 7.4 Contig21187_at Contig21187 - - 1e+0 At3g52420 OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.5 100.0 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
57.3 100.0 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
44.9 99.9 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
36.2 99.9 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
36.1 99.9 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
19.4 99.7 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
15.3 99.6 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
10.0 99.1 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.8 98.9 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.5 98.6 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 965 Contig4812_s_at Contig4812 - - 1e+0 At1g70700 TIFY7 C.G. S.X.
0.93 0 965 Contig4812_at Contig4812 - - 1e+0 At1g70700 TIFY7 C.G. S.X.
0.64 1e-100 365 Contig4813_at Contig4813 - - 1e+0 At1g70700 TIFY7 C.G. S.X.
0.65 3e-83 307 Contig4816_x_at Contig4816 - - 5e+0 At1g70700 TIFY7 C.G. S.X.
0.65 3e-83 307 Contig4816_at Contig4816 - - 5e+0 At1g70700 TIFY7 C.G. S.X.
0.61 2e-81 301 Contig4815_at Contig4815 - - 1e+0 At5g24318 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.32 3e-24 111 HVSMEb0011I17r2_s_at HVSMEb0011I17r2 - - 2e+0 At1g70700 TIFY7 C.G. S.X.
0.06 2e-7 56 Contig3205_at Contig3205 - - 3e-7 At4g14710 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding C.G. S.X.
0.06 2e-7 56 Contig3205_s_at Contig3205 - - 3e-7 At4g14710 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At3g60530 825224 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM - - - C.G. S.X.
0.03 4e-1 36 Glycine max PsAffx.CL1014Contig1_s_at PsAffx.CL1014Contig1 - - 5e+0 At4g32785 - C.G. S.X.
0.17 1e-20 101 Oryza sativa Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.222622.1.S1_s_at pmrna40163 glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 - 3e-4 At5g11180 ATGLR2.6 C.G. S.X.
0.59 3e-134 478 Triticum aestivum Ta.5149.1.A1_at CK213896 - - 3e-1 At1g07690 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614916_at CB975077 aquaporin PIP2 - 2e-27 At3g54820 PIP2 C.G. S.X.
0.03 4e-2 38 Zea mays Zm.17088.1.A1_at BM497690 pnFL-2 - 4e-2 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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