CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4804_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.88 95.2 Contig4804_at Contig4804 - - 1e-1 At1g72600 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.32 40.3 Contig2058_s_at Contig2058 - - 1e+0 At5g60680 unknown protein S.X. H.G.
0.12 10.4 HX03P07u_at HX03P07u - - 4e-31 At1g09200 histone H3 S.X. H.G.
0.05 4.1 HVSMEa0002M23r2_at HVSMEa0002M23r2 - - 3e+0 At5g24650 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein S.X. H.G.
0.05 4.1 Contig1580_x_at Contig1580 precursor thionin - 3e-1 At1g28490 SYP61 (SYNTAXIN OF PLANTS 61) S.X. H.G.
0.05 4.1 Contig7021_at Contig7021 - - 7e-1 At3g05425 unknown protein S.X. H.G.
0.04 3.4 HVSMEm0011I15r2_s_at HVSMEm0011I15r2 - - 1e+1 At5g04380 S-adenosyl-L-methionine:carboxyl methyltransferase family protein S.X. H.G.
0.03 2.6 HF21P16r_at HF21P16r - - 3e+0 At4g00420 double-stranded RNA-binding domain (DsRBD)-containing protein S.X. H.G.
0.03 2.6 Contig13638_at Contig13638 - - 4e+0 At4g25660 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.4 99.6 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
14.7 99.5 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4 99.2 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5 96.7 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.9 95.8 GSM71156 Morex stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.8 95.7 GSM440961 Stressed lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
3.3 94.6 GSM440973 Stressed awn_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.0 93.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-4 46 Contig5579_at Contig5579 - - 1e-1 At3g05020 ACP1 (acyl carrier protein 1) C.G. S.X.
0.03 1e-2 40 Contig9163_at Contig9163 - - 2e-6 At1g03680 ATHM1 C.G. S.X.
0.02 5e-2 38 Contig620_at Contig620 - - 6e-19 At2g34420 LHB1B2 C.G. S.X.
0.02 2e-1 36 Contig14796_at Contig14796 - - 6e-14 At5g13610 unknown protein C.G. S.X.
0.02 2e-1 36 Contig10040_at Contig10040 - - 7e-4 At2g47420 dimethyladenosine transferase, putative C.G. S.X.
0.04 2e-1 36 HVSMEl0013N20r2_at HVSMEl0013N20r2 - - 7e-2 At3g44140 unknown protein C.G. S.X.
0.01 2e-1 36 Contig7369_at Contig7369 - - 4e-3 At1g59650 CW14 C.G. S.X.
0.02 8e-1 34 Contig7936_at Contig7936 - - 1e-14 At4g38320 HHP5 (heptahelical protein 5) C.G. S.X.
0.03 8e-1 34 HO13I12S_at HO13I12S - - 1e+0 At3g58140 phenylalanyl-tRNA synthetase class IIc family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Arabidopsis thaliana At1g72600 843592 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFOBAV - - - C.G. S.X.
0.03 4e-2 40 Glycine max Gma.8859.1.A1_at BU548731 - - 3e-1 At3g57500 unknown protein C.G. S.X.
0.35 2e-81 303 Oryza sativa Os03g0263700 AK071748.1 - Conserved hypothetical protein 5e+0 At5g06020 self-incompatibility protein-related C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.201051.1.S1_at pmrna2071 multidrug/pheromone exporter, MDR family, ABC transporter family - 3e-3 At3g49300 proline-rich family protein C.G. S.X.
0.34 7e-43 174 Triticum aestivum TaAffx.113540.1.S1_at CA609979 - - 1e+1 At4g10695 unknown protein C.G. S.X.
0.08 2e-3 42 Vitis vinifera 1622126_at CF568916 - - 7e-8 At4g08230 glycine-rich protein C.G. S.X.
0.35 7e-41 167 Zea mays Zm.7704.1.A1_at BM079575 hypothetical protein LOC100278612 - 5e-3 At1g62240 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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