CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4779_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 69.7 Contig4779_s_at Contig4779 - - 2e-8 At3g53710 AGD6 S.X. H.G.
0.71 87.1 HF13G03r_at HF13G03r - - 4e+0 At2g30020 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.63 80.3 Contig2053_at Contig2053 - - 5e+0 At2g38880 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) S.X. H.G.
0.57 74.9 Contig4486_at Contig4486 - - 4e-1 At5g16470 zinc finger (C2H2 type) family protein S.X. H.G.
0.57 74.9 Contig7972_at Contig7972 - - 7e+0 At5g55810 AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase) S.X. H.G.
0.55 72.0 HVSMEi0017F16r2_x_at HVSMEi0017F16r2 - - 2e+0 At2g33620 DNA-binding family protein / AT-hook protein 1 (AHP1) S.X. H.G.
0.46 61.0 Contig1012_s_at Contig1012 - - 2e-43 At2g34420 LHB1B2 S.X. H.G.
0.36 47.1 Contig4672_at Contig4672 - - 4e-71 At5g10840 endomembrane protein 70, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.8 98.6 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
7.8 98.6 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
6.7 98.3 GSM282034 Malting_steeped_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.4 96.6 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0 96.0 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9 95.8 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9 95.8 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8 95.7 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6 95.3 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6 95.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 0 795 Contig4778_at Contig4778 - - 6e-8 At3g53710 AGD6 C.G. S.X.
0.16 1e-112 404 Contig4777_at Contig4777 - - 4e-37 At5g46570 BSK2 (BR-SIGNALING KINASE 2) C.G. S.X.
0.01 6e-1 34 Contig3489_at Contig3489 - - 4e+0 At3g13882 structural constituent of ribosome C.G. S.X.
0.03 2e+0 32 rbags21b15_at rbags21b15 - - 1e+0 At5g57887 unknown protein C.G. S.X.
0.01 2e+0 32 Contig3606_at Contig3606 - - 8e-32 At1g30580 GTP binding C.G. S.X.
0.02 2e+0 32 Contig1323_s_at Contig1323 - - 1e-72 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
0.03 2e+0 32 rbah36l17_s_at rbah36l17 - - 7e-30 At1g30580 GTP binding C.G. S.X.
0.03 2e+0 32 Contig23069_at Contig23069 - - 2e-2 At5g50490 NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5) C.G. S.X.
0.02 2e+0 32 Contig18976_at Contig18976 - - 2e+0 At5g38396 F-box family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-8 59 Arabidopsis thaliana At3g53710 824538 AGD6 A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. - - - C.G. S.X.
0.14 7e-6 52 Glycine max GmaAffx.7014.1.S1_at BI469035 - - 7e-12 At2g37550 AGD7 C.G. S.X.
0.21 4e-76 286 Oryza sativa Os03g0278400 AK070052.1 - ADP ribosylation GTPase-like protein (Fragment) 3e-7 At2g37550 AGD7 C.G. S.X.
0.16 1e-4 48 Populus trichocarpa Ptp.6163.2.S1_s_at CF234204 hypothetical protein - 9e-24 At3g53710 AGD6 C.G. S.X.
0.48 1e-167 589 Triticum aestivum Ta.2718.2.S1_a_at CK168482 - - 9e-9 At3g53710 AGD6 C.G. S.X.
0.04 2e-2 38 Vitis vinifera 1616525_s_at CF200762.1 hypothetical protein LOC100243581 - 1e-15 At5g46430 60S ribosomal protein L32 (RPL32B) C.G. S.X.
0.29 2e-65 248 Zea mays Zm.13620.1.A1_at CK369896 - - 8e-6 At2g37550 AGD7 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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