Gene omics information

Query gene ID	Contig4774_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4774_s_at	Contig4774	-	-	8e+0	At5g62720	integral membrane HPP family protein	S.X.	H.G.	Please select
0.83	94.0	Contig10547_at	Contig10547	-	-	6e-1	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig9778_at	Contig9778	-	-	2e+0	At3g02120	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.40	53.1	rbah29m06_s_at	rbah29m06	-	-	4e-1	At1g54050	17.4 kDa class III heat shock protein (HSP17.4-CIII)	S.X.	H.G.	Please select
0.35	45.1	Contig5262_at	Contig5262	-	-	7e-8	At1g31970	STRS1 (STRESS RESPONSE SUPPRESSOR 1)	S.X.	H.G.	Please select
0.20	21.1	Contig4285_at	Contig4285	-	-	4e-1	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	98.8	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.4	98.8	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.2	98.5	GSM398279	Moroc9-75_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.1	98.4	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
7.0	98.4	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.0	98.4	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.9	98.3	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.5	98.2	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.4	98.1	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.0	97.9	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	1711	Contig4773_at	Contig4773	-	-	8e+0	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.01	3e-4	46	Contig11063_at	Contig11063	-	-	3e-1	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4288_at	Contig4288	-	-	2e-1	At5g24400	emb2024 (embryo defective 2024)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7196_s_at	Contig7196	-	-	3e-6	At1g13820	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7196_at	Contig7196	-	-	3e-6	At1g13820	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig17345_at	Contig17345	-	-	6e-3	At2g20750	ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig13743_at	Contig13743	-	-	1e+0	At3g61172	LCR8 (Low-molecular-weight cysteine-rich 8)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig25977_at	Contig25977	-	-	1e+0	At3g28680	prolylcarboxypeptidase-related	C.G.	S.X.	Please select
0.02	1e+0	34	Contig10491_at	Contig10491	-	-	2e+0	Atmg01100	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g62720	836393	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.CL94Contig1_at	PsAffx.CL94Contig1	-	-	5e+0	At2g31090	unknown protein	C.G.	S.X.	Please select
0.32	3e-96	353	Oryza sativa	Os02g0556800	AK100187.1	-	Conserved hypothetical protein	3e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.205662.1.S1_at	pmrna11178	hypothetical protein	-	1e+0	At1g01640	speckle-type POZ protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	0	888	Triticum aestivum	Ta.645.1.S1_a_at	CK212406	-	-	9e+0	At2g28550	RAP2.7 (RELATED TO AP2.7)	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1622481_x_at	CF568921	-	-	3e-2	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	C.G.	S.X.	Please select
0.29	1e-80	299	Zea mays	Zm.10811.2.S1_at	BM079148	-	-	8e+0	At4g14730	transmembrane protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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