Gene omics information

Query gene ID	Contig4760_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	S.X.	H.G.	Please select
0.83	94.0	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.67	84.7	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	S.X.	H.G.	Please select
0.57	74.9	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select
0.55	72.0	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	S.X.	H.G.	Please select
0.44	58.9	Contig6581_at	Contig6581	-	-	6e-2	At3g26330	CYP71B37	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.8	99.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
22.8	99.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
19.2	99.7	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.3	99.5	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
13.5	99.5	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
13.1	99.4	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.7	99.4	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.2	99.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.1	99.3	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
11.6	99.3	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	3e-12	71	Contig3842_s_at	Contig3842	-	-	1e-3	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select
0.21	3e-12	71	Contig3842_at	Contig3842	-	-	1e-3	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig3441_at	Contig3441	-	-	7e-14	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.03	7e-1	34	HV01L21w_at	HV01L21w	-	-	2e-4	At1g23290	RPL27AB	C.G.	S.X.	Please select
0.02	7e-1	34	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Contig8671_at	Contig8671	-	-	3e-6	At3g05600	epoxide hydrolase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Contig8464_at	Contig8464	-	-	3e+0	At5g07840	ankyrin repeat family protein	C.G.	S.X.	Please select
0.05	3e+0	32	HVSMEm0018C06r2_at	HVSMEm0018C06r2	-	-	4e+0	At5g15610	proteasome family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig15655_at	Contig15655	-	-	2e+0	At1g08180	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g38700	830026	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-3	42	Glycine max	Gma.4209.1.S1_a_at	CD402114	-	-	9e-2	At1g20990	DC1 domain-containing protein	C.G.	S.X.	Please select
0.40	1e-73	278	Oryza sativa	Os01g0225600	AK063645.1	-	Late embryogenesis abundant protein Lea14-A	4e-1	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.200129.1.S1_at	pmrna239	hypothetical protein	-	2e-8	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	739	Triticum aestivum	Ta.25026.1.S1_at	BQ804965	-	-	5e-1	At3g02480	ABA-responsive protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1609339_at	CF518412	hypothetical protein LOC100249314	-	5e-12	At4g14900	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.16	1e-14	79	Zea mays	Zm.2020.1.A1_at	AY105938.1	hypothetical protein LOC100274480	-	1e-4	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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