Gene omics information

Query gene ID	Contig4710_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4710_at	Contig4710	-	-	3e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	S.X.	H.G.	Please select
0.91	98.1	Contig4707_x_at	Contig4707	-	-	5e+0	At2g35900	unknown protein	S.X.	H.G.	Please select
0.73	88.7	HVSMEn0024D12r2_at	HVSMEn0024D12r2	-	-	5e-1	At1g34520	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	S.X.	H.G.	Please select
0.67	84.7	Contig2632_s_at	Contig2632	-	-	4e+0	At5g37550	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig5376_at	Contig5376	-	-	3e+0	At3g44950	glycine-rich protein	S.X.	H.G.	Please select
0.50	66.9	Contig8661_at	Contig8661	-	-	1e+0	At3g48298	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
52.7	100.0	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
33.3	99.9	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
31.4	99.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
20.7	99.7	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
20.7	99.7	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
18.4	99.7	GSM372938	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.9	99.3	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.9	99.3	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
9.4	99.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	805	Contig4711_s_at	Contig4711	-	-	6e+0	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEg0010K10r2_at	HVSMEg0010K10r2	-	-	9e-1	At5g52200	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig3840_at	Contig3840	-	-	2e-3	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEl0003E22r2_at	HVSMEl0003E22r2	-	-	5e+0	At5g60430	antiporter/ drug transporter	C.G.	S.X.	Please select
0.03	2e+0	32	Contig22918_at	Contig22918	-	-	3e-1	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig21047_at	Contig21047	-	-	1e+0	At1g04500	zinc finger CONSTANS-related	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5650_at	Contig5650	-	-	2e-7	At2g36310	URH1 (URIDINE-RIBOHYDROLASE 1)	C.G.	S.X.	Please select
0.02	1e+1	30	Contig4715_at	Contig4715	-	-	1e+0	At4g10810	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Contig3535_at	Contig3535	-	-	2e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At2g17560	816263	HMGB4 (HIGH MOBILITY GROUP B 4)	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.14614.1.S1_at	BM732578	-	-	8e-1	At1g70040	unknown protein	C.G.	S.X.	Please select
0.02	7e-7	56	Oryza sativa	Os06g0708000	AF194415.1	-	MAP kinase homolog	1e-68	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.4101.1.S1_s_at	BU837371	-	-	7e-8	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	3e-29	129	Triticum aestivum	Ta.29358.1.A1_at	BJ321494	-	-	2e-6	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1618900_at	CD802451	-	-	1e+0	At1g35260	MLP165 (MLP-LIKE PROTEIN 165)	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.9971.1.A1_at	BM338027	hypothetical protein LOC100192482	-	1e+0	At1g33760	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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