Gene omics information

Query gene ID	Contig4707_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4707_x_at	Contig4707	-	-	5e+0	At2g35900	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig4710_at	Contig4710	-	-	3e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	S.X.	H.G.	Please select
0.73	88.7	HVSMEn0024D12r2_at	HVSMEn0024D12r2	-	-	5e-1	At1g34520	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	S.X.	H.G.	Please select
0.67	84.7	Contig2632_s_at	Contig2632	-	-	4e+0	At5g37550	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig5376_at	Contig5376	-	-	3e+0	At3g44950	glycine-rich protein	S.X.	H.G.	Please select
0.50	66.9	Contig8661_at	Contig8661	-	-	1e+0	At3g48298	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.2	99.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.6	98.8	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.6	98.8	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM310867	lina_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.4	98.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.4	98.5	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1112	Contig4707_at	Contig4707	-	-	5e+0	At2g35900	unknown protein	C.G.	S.X.	Please select
0.79	0	702	HVSMEm0004L13r2_s_at	HVSMEm0004L13r2	-	-	4e+0	At2g04390	40S ribosomal protein S17 (RPS17A)	C.G.	S.X.	Please select
0.57	2e-99	361	HT12J09u_x_at	HT12J09u	-	-	6e-1	At3g43490	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.57	2e-99	361	HT12J09u_at	HT12J09u	-	-	6e-1	At3g43490	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.02	9e-3	40	Contig7622_at	Contig7622	-	-	2e-7	At3g18380	sequence-specific DNA binding / transcription factor	C.G.	S.X.	Please select
0.03	4e-2	38	Contig234_s_at	Contig234	-	-	3e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.04	1e-1	36	Contig17462_at	Contig17462	-	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig8970_at	Contig8970	-	-	1e-2	At5g20560	beta-1,3-glucanase, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Contig2470_s_at	Contig2470	-	-	1e-1	At4g16380	metal ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At2g35900	818163	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psHB005xJ07f_at	PsAffx.psHB005xJ07f	-	-	4e+0	At5g66860	-	C.G.	S.X.	Please select
0.15	7e-10	65	Oryza sativa	Os05g0344200	BI812679	-	Hypothetical protein	3e+0	At2g02350	SKIP3 (SKP1 INTERACTING PARTNER 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.215734.1.S1_at	pmrna30096	hypothetical protein	-	2e+0	At4g12850	far-red impaired responsive family protein / FAR1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	1e-74	280	Triticum aestivum	Ta.23362.2.S1_at	CA639097	-	-	2e+0	At5g61130	PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1611797_at	CF208103	hypothetical protein LOC100257001	-	3e-38	At2g30060	Ran-binding protein 1b (RanBP1b)	C.G.	S.X.	Please select
0.12	3e-5	48	Zea mays	Zm.16502.4.A1_at	CK986103	hypothetical protein LOC100277865 /// hypothetical protein LOC100280121	-	1e-1	At1g51080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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