Gene omics information

Query gene ID	Contig4701_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig4701_at	Contig4701	-	-	2e-1	At1g19660	wound-responsive family protein	S.X.	H.G.	Please select
0.90	95.7	rbasd23b03_s_at	rbasd23b03	-	-	8e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	S.X.	H.G.	Please select
0.56	74.3	Contig24006_at	Contig24006	-	-	4e+0	At4g13150	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig5106_at	Contig5106	-	-	3e-8	At5g66650	unknown protein	S.X.	H.G.	Please select
0.51	67.5	Contig5108_s_at	Contig5108	-	-	6e-9	At1g48850	EMB1144 (embryo defective 1144)	S.X.	H.G.	Please select
0.50	66.9	Contig1269_at	Contig1269	-	-	2e-84	At3g17390	MTO3 (METHIONINE OVER-ACCUMULATOR 3)	S.X.	H.G.	Please select
0.44	58.9	Contig33_at	Contig33	-	-	6e+0	At4g04780	MED21 (MEDIATOR 21)	S.X.	H.G.	Please select
0.43	56.4	Contig11093_at	Contig11093	-	-	3e-21	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	S.X.	H.G.	Please select
0.42	55.2	Contig25358_at	Contig25358	-	-	2e+0	At1g60850	ATRPAC42	S.X.	H.G.	Please select
0.42	55.2	rbasd3a10_s_at	rbasd3a10	-	-	1e-6	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.4	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.2	99.2	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
10.8	99.2	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.6	99.2	GSM372958	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.5	99.2	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.0	99.1	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
9.0	98.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.3	98.5	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM372938	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5	98.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-102	373	HO04H12S_s_at	HO04H12S	-	-	2e+0	At2g36325	hydrolase, acting on ester bonds	C.G.	S.X.	Please select
0.28	4e-96	351	rbaal27g13_x_at	rbaal27g13	-	-	7e+0	At5g41380	-	C.G.	S.X.	Please select
0.04	9e-5	48	rbah31f14_s_at	rbah31f14	-	-	1e+0	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please select
0.02	8e-2	38	Contig9080_s_at	Contig9080	-	-	5e-14	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4186_at	Contig4186	-	-	3e-4	At3g17160	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig10020_at	Contig10020	-	-	3e-5	At1g29810	dehydratase family	C.G.	S.X.	Please select
0.01	1e+0	34	Contig12505_at	Contig12505	-	-	3e+0	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig12445_at	Contig12445	-	-	5e-1	At4g17486	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Contig9668_at	Contig9668	-	-	4e+0	At5g51650	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	38	Arabidopsis thaliana	At1g19660	838553	wound-responsive family protein	F:unknown;P:response to wounding;C:unknown;BOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-3	46	Glycine max	GmaAffx.3619.1.S1_at	BQ785103	-	-	5e-76	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please select
0.51	0	674	Oryza sativa	Os01g0702000	AK065414.1	-	Conserved hypothetical protein	4e-5	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-2	40	Populus trichocarpa	PtpAffx.10771.1.S1_a_at	CV283492	hypothetical protein	-	9e-50	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	904	Triticum aestivum	Ta.641.1.S1_at	BG906659	-	-	7e-4	At1g19660	wound-responsive family protein	C.G.	S.X.	Please select
0.09	8e-7	54	Vitis vinifera	1621693_at	BQ792185	hypothetical protein LOC100248963	-	5e-73	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please select
0.21	6e-18	91	Zea mays	Zm.3569.1.A1_at	CO518726	hypothetical protein LOC100280101	-	5e+0	At3g55600	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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