CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4670_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 78.7 Contig4670_at Contig4670 - - 4e+0 At4g32530 vacuolar ATP synthase, putative / V-ATPase, putative S.X. H.G.
0.55 72.0 HW01B08u_at HW01B08u - - 2e-1 At5g44540 tapetum-specific protein-related S.X. H.G.
0.40 53.1 Contig375_s_at Contig375 - - 5e+0 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) S.X. H.G.
0.36 47.1 Contig13054_at Contig13054 - - 1e-17 At5g05080 UBC22 (ubiquitin-conjugating enzyme 22) S.X. H.G.
0.21 22.6 Contig16254_at Contig16254 - - 4e-2 At4g22730 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.09 7.4 Contig18024_at Contig18024 - - 9e-8 At2g19760 PRF1 (PROFILIN 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.0 99.5 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
11.2 99.2 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.9 99.1 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.2 99.0 GSM282029 Malting_day1_Merit_rep3 GSE11200 Expression data from malting barley seeds
9.0 98.9 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
7.3 98.5 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3 97.4 GSM373005 genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2 97.4 GSM146374 Golden Promise shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1 97.3 GSM282027 Malting_day1_Legacy_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.86 0 983 Contig4670_s_at Contig4670 - - 4e+0 At4g32530 vacuolar ATP synthase, putative / V-ATPase, putative C.G. S.X.
0.38 0 676 Contig4668_at Contig4668 - - 6e-20 At4g26110 NAP1 C.G. S.X.
0.73 2e-148 523 HVSMEa0009A11r2_at HVSMEa0009A11r2 - - 1e-2 At4g32530 vacuolar ATP synthase, putative / V-ATPase, putative C.G. S.X.
0.03 5e-1 34 Contig16874_at Contig16874 - - 6e+0 At5g67010 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 5e-1 34 Contig3054_at Contig3054 - - 3e-5 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
0.03 5e-1 34 Contig17259_at Contig17259 - - 5e-6 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.02 5e-1 34 Contig10840_at Contig10840 - - 4e-6 At5g50780 ATP binding C.G. S.X.
0.02 5e-1 34 Contig10164_at Contig10164 - - 6e-4 At5g13050 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) C.G. S.X.
0.02 5e-1 34 Contig3054_s_at Contig3054 - - 3e-5 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At4g32530 829388 vacuolar ATP synthase, putative / V-ATPase, putative F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MFOPBA - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.psHA011iH03r_s_at PsAffx.psHA011iH03r - - 1e+1 At5g37900 seven in absentia (SINA) family protein C.G. S.X.
0.07 9e-3 42 Oryza sativa Os06g0149400 AK071177.1 - Nucleosome assembly protein 1 1e-36 At5g56950 NAP1 C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.59943.1.S1_at DN487540 - - 1e+0 At5g44565 unknown protein C.G. S.X.
0.27 1e-55 216 Triticum aestivum Ta.7602.1.S1_at BJ250297 nucleosome assembly protein I - 2e-26 At4g26110 NAP1 C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1620676_at CB835980 - - 5e+0 At2g34700 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.03 1e-4 46 Zea mays Zm.14710.1.S1_at AY232823.1 nucleosome/chromatin assembly factor group A - 1e-5 At4g26110 NAP1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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