CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4647_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig4647_at Contig4647 - - 3e-3 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein S.X. H.G.
0.67 84.7 Contig6066_at Contig6066 - - 4e+0 At5g23640 unknown protein S.X. H.G.
0.57 74.9 Contig8299_at Contig8299 - - 3e-9 At3g20650 mRNA capping enzyme family protein S.X. H.G.
0.46 61.0 Contig4172_at Contig4172 - - 2e-2 At3g52090 NRPB11 S.X. H.G.
0.44 58.9 Contig15070_at Contig15070 - - 1e-2 At4g10810 unknown protein S.X. H.G.
0.36 47.1 Contig8629_at Contig8629 - - 3e-6 At2g17190 ubiquitin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.6 99.7 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
15.4 99.6 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
13.9 99.5 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.4 99.4 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
9.5 99.0 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.8 98.9 GSM282034 Malting_steeped_Morex_rep1 GSE11200 Expression data from malting barley seeds
6.5 98.2 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.1 98.0 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.99 0 2420 Contig4647_s_at Contig4647 - - 3e-3 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein C.G. S.X.
0.80 0 1298 Contig4646_at Contig4646 - - 1e-8 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein C.G. S.X.
0.02 8e-2 38 Contig8711_at Contig8711 - - 4e-12 At1g19230 respiratory burst oxidase protein E (RbohE) / NADPH oxidase C.G. S.X.
0.02 8e-2 38 Contig4091_at Contig4091 - - 3e-13 At1g47128 RD21 (responsive to dehydration 21) C.G. S.X.
0.02 8e-2 38 Contig4090_s_at Contig4090 triticain beta 2 - 4e-7 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.01 3e-1 36 Contig1860_x_at Contig1860 - - 2e-3 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.02 3e-1 36 Contig15282_at Contig15282 - - 2e+0 At2g29450 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) C.G. S.X.
0.01 3e-1 36 Contig1860_s_at Contig1860 - - 2e-3 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.02 3e-1 36 Contig24535_at Contig24535 - - 2e-1 At3g51220 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-3 44 Arabidopsis thaliana At2g37990 818377 ribosome biogenesis regulatory protein (RRS1) family protein F:unknown;P:ribosome biogenesis;C:nucleolus;MFOPB - - - C.G. S.X.
0.03 2e-1 38 Glycine max PsAffx.C47000010_at PsAffx.C47000010 - - 5e-2 At5g43960 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein C.G. S.X.
0.60 3e-131 470 Oryza sativa Os04g0685100 AK065262.1 - Ribosomal biogenesis regulatory protein familyprotein 3e-6 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein C.G. S.X.
0.04 1e-3 46 Populus trichocarpa Ptp.6488.1.S1_s_at CN524704 hypothetical protein - 3e-5 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein C.G. S.X.
0.71 0 1421 Triticum aestivum Ta.9976.1.S1_x_at CK199603 - - 2e-4 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein C.G. S.X.
0.07 2e-7 56 Vitis vinifera 1606576_at CB982644 hypothetical protein LOC100253336 - 2e-6 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein C.G. S.X.
0.02 3e-1 36 Zea mays Zm.15084.1.A1_at BM350611 - - 6e-2 At1g62240 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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