CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4641_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig4641_s_at Contig4641 - - 2e-3 At4g00810 60S acidic ribosomal protein P1 (RPP1B) S.X. H.G.
0.09 7.4 Contig21216_at Contig21216 - - 2e+0 At3g12760 - S.X. H.G.
0.05 4.1 HA28N15r_x_at HA28N15r - - 3e-22 At5g59690 histone H4 S.X. H.G.
0.04 3.4 Contig18016_at Contig18016 - - 2e+0 At4g19350 EMB3006 (embryo defective 3006) S.X. H.G.
0.02 1.8 HV_CEa0009K11r2_at HV_CEa0009K11r2 - - 3e+0 At4g23010 UDP-galactose transporter-related S.X. H.G.
0.02 1.8 HVSMEl0006A12r2_at HVSMEl0006A12r2 - - 2e+0 At5g57450 XRCC3 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.5 99.8 GSM372999 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.7 99.7 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.3 99.5 GSM372994 genotype: 11542 - pathogen isolates: K1 - time: 0 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.5 99.4 GSM372998 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.6 99.0 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
7.8 98.6 GSM372978 genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.3 98.5 GSM372975 genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.3 98.5 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9 98.3 GSM373004 genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6 98.2 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 2e-97 355 Contig4636_at Contig4636 - - 4e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.57 6e-91 333 Contig9576_at Contig9576 - - 1e+0 At3g25855 unknown protein C.G. S.X.
0.53 3e-68 258 Contig9575_at Contig9575 - - 2e+0 At3g25855 unknown protein C.G. S.X.
0.33 3e-56 218 Contig11454_at Contig11454 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.35 6e-54 210 Contig4640_s_at Contig4640 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.35 6e-54 210 Contig4640_at Contig4640 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.32 4e-49 194 Contig4639_s_at Contig4639 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.32 4e-49 194 Contig4639_at Contig4639 - - 3e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.07 4e-15 81 Contig26395_at Contig26395 - - 5e+0 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-3 44 Arabidopsis thaliana At4g00810 828004 60S acidic ribosomal protein P1 (RPP1B) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA - - - C.G. S.X.
0.05 2e-7 57 Glycine max PsAffx.CL1435Contig1_at PsAffx.CL1435Contig1 - - 2e+1 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.16 4e-12 73 Oryza sativa Os04g0667600 AK068657.1 - Heavy metal transport/detoxification proteindomain containing protein 2e+0 At1g15860 - C.G. S.X.
0.02 9e+0 32 Populus trichocarpa PtpAffx.81885.1.A1_at CV269230 - - 1e+0 At3g19200 unknown protein C.G. S.X.
0.75 2e-163 575 Triticum aestivum Ta.20562.1.S1_at BQ743969 - - 6e+0 At5g40040 60S acidic ribosomal protein P2 (RPP2E) C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1609216_at CF202485.1 - - 8e-2 At1g01490 heavy-metal-associated domain-containing protein C.G. S.X.
0.12 8e-13 73 Zea mays Zm.7677.1.A1_at BM331802 metal ion binding protein - 1e+0 At2g35760 integral membrane family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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