Gene omics information

Query gene ID	Contig460_s_at
Gene name	sucrose synthase
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig460_s_at	Contig460	sucrose synthase	-	6e-12	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	S.X.	H.G.	Please select
0.60	77.3	HVSMEl0024B05r2_at	HVSMEl0024B05r2	-	-	4e+0	At5g08480	VQ motif-containing protein	S.X.	H.G.	Please select
0.60	77.3	Contig11890_at	Contig11890	-	-	4e-5	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please select
0.44	58.9	Contig16601_at	Contig16601	-	-	3e+0	At2g40070	-	S.X.	H.G.	Please select
0.40	53.1	Contig14009_s_at	Contig14009	-	-	2e+0	At4g37020	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	99.0	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
8.5	98.8	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.3	98.1	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.3	98.1	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.3	97.4	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.3	97.4	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	0	1396	Contig861_at	Contig861	-	-	3e-8	At3g43190	SUS4	C.G.	S.X.	Please select
0.35	0	1184	Contig361_s_at	Contig361	-	-	9e-8	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.30	0	779	Contig689_s_at	Contig689	sucrose synthase	-	2e-5	At5g49190	SUS2 (SUCROSE SYNTHASE 2)	C.G.	S.X.	Please select
0.44	3e-132	472	Contig602_at	Contig602	-	-	7e-23	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.17	2e-115	416	HT05G13u_x_at	HT05G13u	-	-	1e-1	At3g25882	NIMIN-2 (NIM1-INTERACTING 2)	C.G.	S.X.	Please select
0.50	2e-93	343	Contig823_at	Contig823	-	-	2e-24	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.15	3e-80	299	HU05I05u_x_at	HU05I05u	-	-	2e+0	At4g37110	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.10	2e-75	284	EBem09_SQ004_H15_x_at	EBem09_SQ004_H15	-	-	5e+0	At4g39917	LCR45 (Low-molecular-weight cysteine-rich 45)	C.G.	S.X.	Please select
0.19	2e-38	161	Contig23306_at	Contig23306	-	-	5e-10	At3g43190	SUS4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	6e-12	73	Arabidopsis thaliana	At5g20830	832206	SUS1 (SUCROSE SYNTHASE 1)	Encodes a protein with sucrose synthase activity (SUS1).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	1e-32	143	Glycine max	Gma.3956.1.S1_at	BE659401	-	-	4e-139	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.75	0	2567	Oryza sativa	Os06g0194900	AK119193.1	-	Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase 1)	3e-60	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	4e-32	141	Populus trichocarpa	PtpAffx.283.1.A1_x_at	CV226943	hypothetical protein	-	5e-96	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	3864	Triticum aestivum	Ta.92.1.S1_s_at	CD869165	sucrose synthase type I	-	1e-22	At3g43190	SUS4	C.G.	S.X.	Please select
0.40	2e-36	153	Vitis vinifera	1619223_s_at	CB005867	hypothetical protein LOC100249279	-	3e-41	At3g43190	SUS4	C.G.	S.X.	Please select
0.74	0	2343	Zea mays	Zm.6977.1.S1_at	X02400.1	sucrose synthase	-	8e-27	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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