Gene omics information

Query gene ID Contig4608_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5774.9Contig4608_atContig4608--3e-9At1g12840DET3 (DE-ETIOLATED 3)S.X.H.G.
0.5572.0Contig20086_s_atContig20086--1e+0At5g57570-S.X.H.G.
0.4053.1Contig13204_atContig13204--6e-1At2g03570unknown proteinS.X.H.G.
0.2935.5Contig9680_atContig9680--6e-2At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)S.X.H.G.
0.2732.1Contig21692_atContig21692--3e+0At2g35970harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinS.X.H.G.
0.1615.3Contig10432_atContig10432--2e-29At3g60750transketolase, putativeS.X.H.G.
0.108.4Contig10300_atContig10300--4e-2At4g21740unknown proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.997.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
4.696.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
4.496.6GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
3.895.7GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.795.5GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
3.695.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stress
3.494.8GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stress
3.494.8GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.294.3GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.194.1GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stress
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.016e-342Contig6305_atContig6305--1e+0At5g14930SAG101 (SENESCENCE-ASSOCIATED GENE 101)C.G.S.X.
0.012e-240Contig11761_atContig11761--2e-1At3g61490glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinC.G.S.X.
0.014e-136Contig11674_atContig11674--3e-1At5g49420MADS-box protein (AGL84)C.G.S.X.
0.024e-136HVSMEl0010P10f_x_atHVSMEl0010P10f--2e+0At1g35230AGP5 (ARABINOGALACTAN-PROTEIN 5)C.G.S.X.
0.011e+034Contig2888_atContig2888NADP-dependent malic enzyme-2e-17At5g11670ATNADP-ME2 (NADP-malic enzyme 2)C.G.S.X.
0.021e+034Contig19453_atContig19453--5e+0Atcg00140-C.G.S.X.
0.011e+034Contig2830_atContig2830--2e-4At5g22920zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.011e+034Contig9152_atContig9152--4e-1At3g59370unknown proteinC.G.S.X.
0.011e+034Contig7678_atContig7678--9e-3At5g36001-C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.203e-963Arabidopsis thalianaAt1g12840837840DET3 (DE-ETIOLATED 3)Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.---C.G.S.X.
0.157e-550Glycine maxGma.1440.2.S1_s_atBG839819--6e-32At1g12840DET3 (DE-ETIOLATED 3)C.G.S.X.
0.510805Oryza sativaOs05g0593100AK061855.1-Vacuolar ATP synthase subunit C (EC 3.6.3.14)(V-ATPase C subunit) (Vacuolar proton pump C subunit)2e-10At1g12840DET3 (DE-ETIOLATED 3)C.G.S.X.
0.075e-1273Populus trichocarpaPtpAffx.1148.1.S1_a_atCV261357hypothetical protein-1e-64At1g12840DET3 (DE-ETIOLATED 3)C.G.S.X.
0.6101251Triticum aestivumTa.6496.1.S1_atCD878462vacuolar proton-ATPase C subunit-2e-10At1g12840DET3 (DE-ETIOLATED 3)C.G.S.X.
0.029e-134Vitis vinifera1611100_s_atBQ794859hypothetical protein LOC100255131-6e-15At5g12470unknown proteinC.G.S.X.
0.600805Zea maysZm.4630.2.A1_atCK347497hypothetical protein LOC100273246-8e-7At1g12840DET3 (DE-ETIOLATED 3)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage