Gene omics information

Query gene ID Contig4592_s_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig4592_s_atContig4592--3e-22At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)S.X.H.G.
0.6784.7Contig5342_atContig5342--4e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)S.X.H.G.
0.6784.7Contig2946_atContig2946--5e-5At5g03630ATMDAR2S.X.H.G.
0.6077.3Contig3856_atContig3856--1e-19At1g52600signal peptidase, putativeS.X.H.G.
0.5572.0Contig4662_atContig4662--1e-16At1g61700DNA-directed RNA polymerase II, putative (RPB10)S.X.H.G.
0.4661.0Contig3963_s_atContig3963--7e-39At4g19210ATRLI2S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.098.4GSM382235Root_Control1GSE15295Mercury toxicity in barley roots
5.297.4GSM382237Root_Control3GSE15295Mercury toxicity in barley roots
5.097.2GSM382236Root_Control2GSE15295Mercury toxicity in barley roots
5.097.2GSM382232Root_Hg1GSE15295Mercury toxicity in barley roots
4.696.8GSM146357Golden Promise Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.696.8GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.396.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley roots
4.196.2GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.795.5GSM382234Root_Hg3GSE15295Mercury toxicity in barley roots
3.695.3GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.6101061Contig4593_atContig4593--9e-10At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.046e-1685Contig10231_atContig10231--2e-2At5g12180CPK17C.G.S.X.
0.031e-757Contig15997_atContig15997--9e-22At3g51850CPK13C.G.S.X.
0.075e-756Contig7135_atContig7135--4e-31At2g41860CPK14C.G.S.X.
0.105e-756Contig4589_atContig4589--6e-30At2g17290CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.128e-652Contig11168_atContig11168--1e-15At5g12480CPK7 (calmodulin-domain protein kinase 7)C.G.S.X.
0.073e-550Contig5679_atContig5679--7e-42At4g21940CPK15C.G.S.X.
0.025e-446Contig18277_atContig18277--4e+0At5g22950VPS24.1C.G.S.X.
0.108e-342Contig6447_atContig6447--4e-15At1g35670ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.213e-22107Arabidopsis thalianaAt4g23650828465CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family.---C.G.S.X.
0.393e-38161Glycine maxGmaAffx.92806.1.S1_atCF808531--6e-37At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.6501782Oryza sativaOs01g0622600CB642720-Calcium-dependent protein kinase2e-23At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.171e-22109Populus trichocarpaPtpAffx.5895.1.S1_atCV230287calcium dependent protein kinase 22 /// calcium dependent protein kinase 3-8e-24At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.430634Triticum aestivumTa.3942.1.S1_a_atBJ255487--3e-9At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.023e-136Vitis vinifera1621727_s_atCF511469similar to calmodulin-like domain protein kinase isoenzyme gamma-3e-14At4g21940CPK15C.G.S.X.
0.6401614Zea maysZm.19155.1.S1_atCA401905calcium-dependent protein kinase, isoform 2-9e-29At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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