CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4579_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig4579_s_at Contig4579 - - 2e-9 At5g21150 PAZ domain-containing protein / piwi domain-containing protein S.X. H.G.
0.57 74.9 HY09E16u_at HY09E16u - - 4e+0 At5g02680 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding S.X. H.G.
0.55 72.0 HW06C04u_x_at HW06C04u - - 7e+0 At3g05980 unknown protein S.X. H.G.
0.31 38.6 HY04C04u_at HY04C04u - - 7e-1 At1g09490 cinnamyl-alcohol dehydrogenase family / CAD family S.X. H.G.
0.29 35.5 HT09L15u_at HT09L15u - - 3e-1 At2g43950 OEP37 S.X. H.G.
0.29 35.5 HVSMEf0011J01r2_s_at HVSMEf0011J01r2 - - 6e-2 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.5 99.8 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
17.9 99.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
17.1 99.6 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
17.0 99.6 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
16.1 99.6 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
14.3 99.5 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.8 99.4 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.5 99.2 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM282034 Malting_steeped_Morex_rep1 GSE11200 Expression data from malting barley seeds
6.6 98.2 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 0 1257 Contig4578_at Contig4578 - - 7e-9 At5g21150 PAZ domain-containing protein / piwi domain-containing protein C.G. S.X.
0.57 2e-143 508 HVSMEh0086A12r2_s_at HVSMEh0086A12r2 - - 3e+0 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) C.G. S.X.
0.16 3e-18 91 Contig4826_at Contig4826 - - 4e-13 At5g21150 PAZ domain-containing protein / piwi domain-containing protein C.G. S.X.
0.02 4e-2 38 Contig8708_at Contig8708 - - 2e-1 At5g50790 nodulin MtN3 family protein C.G. S.X.
0.01 2e-1 36 Contig3146_at Contig3146 - - 2e-5 At1g58290 HEMA1 C.G. S.X.
0.03 2e-1 36 Contig17937_at Contig17937 - - 6e+0 At4g36110 auxin-responsive protein, putative C.G. S.X.
0.03 7e-1 34 HZ65M11r_at HZ65M11r - - 2e-5 At1g22480 plastocyanin-like domain-containing protein C.G. S.X.
0.01 7e-1 34 Contig6542_at Contig6542 - - 2e-1 At2g05140 phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein C.G. S.X.
0.01 7e-1 34 Contig12784_at Contig12784 - - 2e-10 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-9 63 Arabidopsis thaliana At5g21150 832241 PAZ domain-containing protein / piwi domain-containing protein F:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFO - - - C.G. S.X.
0.12 5e-1 36 Glycine max GmaAffx.42546.1.A1_at BU548100 - - 2e-14 At2g32940 AGO6 (ARGONAUTE 6) C.G. S.X.
0.14 9e-25 115 Oryza sativa Os01g0275600 AK061675.1 - Argonaute 4 protein 2e-6 At5g21030 PAZ domain-containing protein / piwi domain-containing protein C.G. S.X.
0.10 2e-3 44 Populus trichocarpa PtpAffx.14483.1.S1_at CN519287 argonaute protein group /// argonaute protein group - 4e-8 At5g21150 PAZ domain-containing protein / piwi domain-containing protein C.G. S.X.
0.52 1e-115 416 Triticum aestivum Ta.29442.1.A1_x_at CK209202 - - 2e-2 At5g21150 PAZ domain-containing protein / piwi domain-containing protein C.G. S.X.
0.04 4e-4 44 Vitis vinifera 1612919_at CB971032 - - 4e+0 At2g33510 protein binding C.G. S.X.
0.34 7e-16 83 Zea mays Zm.4930.1.A1_at AY111526.1 - - 2e-9 At2g27040 AGO4 (ARGONAUTE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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